Online bias-aware disease module mining with ROBUST-Web

por Sarkar, Suryadipto, Lucchetta, Marta, Maier, Andreas, Abdrabbou, Mohamed M, Baumbach, Jan, List, Markus, Schaefer, Martin H, Blumenthal, David B
Publicado 2023

Privacy-Preserving Artificial Intelligence Techniques in Biomedicine

por Torkzadehmahani, Reihaneh, Nasirigerdeh, Reza, Blumenthal, David B., Kacprowski, Tim, List, Markus, Matschinske, Julian, Spaeth, Julian, Wenke, Nina Kerstin, Baumbach, Jan
Publicado 2022

Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond

por Sadegh, Sepideh, Skelton, James, Anastasi, Elisa, Maier, Andreas, Adamowicz, Klaudia, Möller, Anna, Kriege, Nils M., Kronberg, Jaanika, Haller, Toomas, Kacprowski, Tim, Wipat, Anil, Baumbach, Jan, Blumenthal, David B.
Publicado 2023

The specific DNA methylation landscape in focal cortical dysplasia ILAE type 3D

por Wang, Dan-Dan, Katoch, Mitali, Jabari, Samir, Blumcke, Ingmar, Blumenthal, David B., Lu, De-Hong, Coras, Roland, Wang, Yu-Jiao, Shi, Jie, Zhou, Wen-Jing, Kobow, Katja, Piao, Yue-Shan
Publicado 2023

Flimma: a federated and privacy-aware tool for differential gene expression analysis

por Zolotareva, Olga, Nasirigerdeh, Reza, Matschinske, Julian, Torkzadehmahani, Reihaneh, Bakhtiari, Mohammad, Frisch, Tobias, Späth, Julian, Blumenthal, David B., Abbasinejad, Amir, Tieri, Paolo, Kaissis, Georgios, Rückert, Daniel, Wenke, Nina K., List, Markus, Baumbach, Jan
Publicado 2021

TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors

por Hoffmann, Markus, Trummer, Nico, Schwartz, Leon, Jankowski, Jakub, Lee, Hye Kyung, Willruth, Lina-Liv, Lazareva, Olga, Yuan, Kevin, Baumgarten, Nina, Schmidt, Florian, Baumbach, Jan, Schulz, Marcel H, Blumenthal, David B, Hennighausen, Lothar, List, Markus
Publicado 2023

Network medicine for disease module identification and drug repurposing with the NeDRex platform

por Sadegh, Sepideh, Skelton, James, Anastasi, Elisa, Bernett, Judith, Blumenthal, David B., Galindez, Gihanna, Salgado-Albarrán, Marisol, Lazareva, Olga, Flanagan, Keith, Cockell, Simon, Nogales, Cristian, Casas, Ana I., Schmidt, Harald H. H. W., Baumbach, Jan, Wipat, Anil, Kacprowski, Tim
Publicado 2021

Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing

por Sadegh, Sepideh, Matschinske, Julian, Blumenthal, David B., Galindez, Gihanna, Kacprowski, Tim, List, Markus, Nasirigerdeh, Reza, Oubounyt, Mhaned, Pichlmair, Andreas, Rose, Tim Daniel, Salgado-Albarrán, Marisol, Späth, Julian, Stukalov, Alexey, Wenke, Nina K., Yuan, Kevin, Pauling, Josch K., Baumbach, Jan
Publicado 2020

Drugst.One - A plug-and-play solution for online systems medicine and network-based drug repurposing

por Maier, Andreas, Hartung, Michael, Abovsky, Mark, Adamowicz, Klaudia, Bader, Gary D., Baier, Sylvie, Blumenthal, David B., Chen, Jing, Elkjaer, Maria L., Garcia-Hernandez, Carlos, Helmy, Mohamed, Hoffmann, Markus, Jurisica, Igor, Kotlyar, Max, Lazareva, Olga, Levi, Hagai, List, Markus, Lobentanzer, Sebastian, Loscalzo, Joseph, Malod-Dognin, Noel, Manz, Quirin, Matschinske, Julian, Mee, Miles, Oubounyt, Mhaned, Pico, Alexander R., Pillich, Rudolf T., Poschenrieder, Julian M., Pratt, Dexter, Pržulj, Nataša, Sadegh, Sepideh, Saez-Rodriguez, Julio, Sarkar, Suryadipto, Shaked, Gideon, Shamir, Ron, Trummer, Nico, Turhan, Ugur, Wang, Ruisheng, Zolotareva, Olga, Baumbach, Jan
Publicado 2023