How subtle changes in 3D structure can create large changes in transcription

por Xiao, Jordan Yupeng, Hafner, Antonina, Boettiger, Alistair N
Publicado 2021

Transcriptional Regulation: Effects of Promoter Proximal Pausing on Speed, Synchrony and Reliability

por Boettiger, Alistair N., Ralph, Peter L., Evans, Steven N.
Publicado 2011

Spatial organization shapes the turnover of a bacterial transcriptome

por Moffitt, Jeffrey R, Pandey, Shristi, Boettiger, Alistair N, Wang, Siyuan, Zhuang, Xiaowei
Publicado 2016

Deep learning connects DNA traces to transcription to reveal predictive features beyond enhancer–promoter contact

por Rajpurkar, Aparna R., Mateo, Leslie J., Murphy, Sedona E., Boettiger, Alistair N.
Publicado 2021

Quantitative cytogenetics reveals molecular stoichiometry and longitudinal organization of meiotic chromosome axes and loops

por Woglar, Alexander, Yamaya, Kei, Roelens, Baptiste, Boettiger, Alistair, Köhler, Simone, Villeneuve, Anne M.
Publicado 2020

Visualizing DNA folding and RNA in embryos at single-cell resolution

por Mateo, Leslie J., Murphy, Sedona E., Hafner, Antonina, Cinquini, Isaac S., Walker, Carly A., Boettiger, Alistair N.
Publicado 2019

Chromatin topology is coupled to Polycomb group protein subnuclear organization

por Wani, Ajazul H., Boettiger, Alistair N., Schorderet, Patrick, Ergun, Ayla, Münger, Christine, Sadreyev, Ruslan I., Zhuang, Xiaowei, Kingston, Robert E., Francis, Nicole J.
Publicado 2016

Super-resolution imaging reveals distinct chromatin folding for different epigenetic states

por Boettiger, Alistair N., Bintu, Bogdan, Moffitt, Jeffrey R., Wang, Siyuan, Beliveau, Brian J., Fudenberg, Geoffrey, Imakaev, Maxim, Mirny, Leonid A., Wu, Chao-ting, Zhuang, Xiaowei
Publicado 2016

Single-cell chromatin state transitions during epigenetic memory formation

por Fujimori, Taihei, Rios-Martinez, Carolina, Thurm, Abby R., Hinks, Michaela M., Doughty, Benjamin R., Sinha, Joydeb, Le, Derek, Hafner, Antonina, Greenleaf, William J., Boettiger, Alistair N., Bintu, Lacramioara
Publicado 2023

Polycomb-mediated genome architecture enables long-range spreading of H3K27 methylation

por Kraft, Katerina, Yost, Kathryn E., Murphy, Sedona E., Magg, Andreas, Long, Yicheng, Corces, M. Ryan, Granja, Jeffrey M., Wittler, Lars, Mundlos, Stefan, Cech, Thomas R., Boettiger, Alistair N., Chang, Howard Y.
Publicado 2022

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

por Lee, Lindsay, Yu, Hongyu, Jia, Bojing Blair, Jussila, Adam, Zhu, Chenxu, Chen, Jiawen, Xie, Liangqi, Hafner, Antonina, Mishra, Shreya, Wang, Duan Dennis, Strambio-De-Castillia, Caterina, Boettiger, Alistair, Ren, Bing, Li, Yun, Hu, Ming
Publicado 2023

A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation

por Llimos, Gerard, Gardeux, Vincent, Koch, Ute, Kribelbauer, Judith F., Hafner, Antonina, Alpern, Daniel, Pezoldt, Joern, Litovchenko, Maria, Russeil, Julie, Dainese, Riccardo, Moia, Riccardo, Mahmoud, Abdurraouf Mokhtar, Rossi, Davide, Gaidano, Gianluca, Plass, Christoph, Lutsik, Pavlo, Gerhauser, Clarissa, Waszak, Sebastian M., Boettiger, Alistair, Radtke, Freddy, Deplancke, Bart
Publicado 2022

Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes

por Beliveau, Brian J., Boettiger, Alistair N., Avendaño, Maier S., Jungmann, Ralf, McCole, Ruth B., Joyce, Eric F., Kim-Kiselak, Caroline, Bantignies, Frédéric, Fonseka, Chamith Y., Erceg, Jelena, Hannan, Mohammed A., Hoang, Hien G., Colognori, David, Lee, Jeannie T., Shih, William M., Yin, Peng, Zhuang, Xiaowei, Wu, Chao-ting
Publicado 2015