The Path to Clinical Proteomics Research: Integration of Proteomics, Genomics, Clinical Laboratory and Regulatory Science

por Boja, Emily S., Rodriguez, Henry
Publicado 2011

Proteogenomic convergence for understanding cancer pathways and networks

por Boja, Emily S, Rodriguez, Henry
Publicado 2014

Integration of omics sciences to advance biology and medicine

por Boja, Emily S, Kinsinger, Christopher R, Rodriguez, Henry, Srinivas, Pothur
Publicado 2014

Analytical Validation Considerations of Multiplex Mass-Spectrometry-Based Proteomic Platforms for Measuring Protein Biomarkers

por Boja, Emily S., Fehniger, Thomas E., Baker, Mark S., Marko-Varga, György, Rodriguez, Henry
Publicado 2014

Right data for right patient—a precisionFDA NCI–CPTAC Multi-omics Mislabeling Challenge

por Boja, Emily, Težak, Živana, Zhang, Bing, Wang, Pei, Johanson, Elaine, Hinton, Denise, Rodriguez, Henry
Publicado 2018

Stoichiometry of STAT3 and Mitochondrial Proteins: IMPLICATIONS FOR THE REGULATION OF OXIDATIVE PHOSPHORYLATION BY PROTEIN-PROTEIN INTERACTIONS

por Phillips, Darci, Reilley, Matthew J., Aponte, Angel M., Wang, Guanghui, Boja, Emily, Gucek, Marjan, Balaban, Robert S.
Publicado 2010

Mapping the KRAS proteoform landscape in colorectal cancer identifies truncated KRAS4B that decreases MAPK signaling

por Adams, Lauren M., DeHart, Caroline J., Drown, Bryon S., Anderson, Lissa C., Bocik, William, Boja, Emily S., Hiltke, Tara M., Hendrickson, Christopher L., Rodriguez, Henry, Caldwell, Michael, Vafabakhsh, Reza, Kelleher, Neil L.
Publicado 2022

Residual tissue repositories as a resource for population-based cancer proteomic studies

por Piehowski, Paul D., Petyuk, Vladislav A., Sontag, Ryan L., Gritsenko, Marina A., Weitz, Karl K., Fillmore, Thomas L., Moon, Jamie, Makhlouf, Hala, Chuaqui, Rodrigo F., Boja, Emily S., Rodriguez, Henry, Lee, Jerry S. H., Smith, Richard D., Carrick, Danielle M., Liu, Tao, Rodland, Karin D.
Publicado 2018

A community effort to identify and correct mislabeled samples in proteogenomic studies

por Yoo, Seungyeul, Shi, Zhiao, Wen, Bo, Kho, SoonJye, Pan, Renke, Feng, Hanying, Chen, Hong, Carlsson, Anders, Edén, Patrik, Ma, Weiping, Raymer, Michael, Maier, Ezekiel J., Tezak, Zivana, Johanson, Elaine, Hinton, Denise, Rodriguez, Henry, Zhu, Jun, Boja, Emily, Wang, Pei, Zhang, Bing
Publicado 2021

Integrated Bottom-Up and Top-Down Proteomics of Patient-Derived Breast Tumor Xenografts

por Ntai, Ioanna, LeDuc, Richard D., Fellers, Ryan T., Erdmann-Gilmore, Petra, Davies, Sherri R., Rumsey, Jeanne, Early, Bryan P., Thomas, Paul M., Li, Shunqiang, Compton, Philip D., Ellis, Matthew J. C., Ruggles, Kelly V., Fenyö, David, Boja, Emily S., Rodriguez, Henry, Townsend, R. Reid, Kelleher, Neil L.
Publicado 2016

A dataset describing a suite of novel antibody reagents for the RAS signaling network

por Schoenherr, Regine M., Huang, Dongqing, Voytovich, Uliana J., Ivey, Richard G., Kennedy, Jacob J., Saul, Richard G., Colantonio, Simona, Roberts, Rhonda R., Knotts, Joseph G., Kaczmarczyk, Jan A., Perry, Candice, Hewitt, Stephen M., Bocik, William, Whiteley, Gordon R., Hiltke, Tara, Boja, Emily S., Rodriguez, Henry, Whiteaker, Jeffrey R., Paulovich, Amanda G.
Publicado 2019

Proteome Profiling Outperforms Transcriptome Profiling for Coexpression Based Gene Function Prediction

por Wang, Jing, Ma, Zihao, Carr, Steven A., Mertins, Philipp, Zhang, Hui, Zhang, Zhen, Chan, Daniel W., Ellis, Matthew J. C., Townsend, R. Reid, Smith, Richard D., McDermott, Jason E., Chen, Xian, Paulovich, Amanda G., Boja, Emily S., Mesri, Mehdi, Kinsinger, Christopher R., Rodriguez, Henry, Rodland, Karin D., Liebler, Daniel C., Zhang, Bing
Publicado 2017

Comprehensive Quantitative Analysis of Ovarian and Breast Cancer Tumor Peptidomes

por Xu, Zhe, Wu, Chaochao, Xie, Fang, Slysz, Gordon W., Tolic, Nikola, Monroe, Matthew E., Petyuk, Vladislav A., Payne, Samuel H., Fujimoto, Grant M., Moore, Ronald J., Fillmore, Thomas L., Schepmoes, Athena A., Levine, Douglas A., Townsend, R. Reid, Davies, Sherri R., Li, Shunqiang, Ellis, Matthew, Boja, Emily, Rivers, Robert, Rodriguez, Henry, Rodland, Karin D., Liu, Tao, Smith, Richard D.
Publicado 2014

Targeted mass-spectrometry-based assays enable multiplex quantification of receptor tyrosine kinase, MAP kinase, and AKT signaling

por Whiteaker, Jeffrey R., Sharma, Kanika, Hoffman, Melissa A., Kuhn, Eric, Zhao, Lei, Cocco, Alexandra R., Schoenherr, Regine M., Kennedy, Jacob J., Voytovich, Ulianna, Lin, Chenwei, Fang, Bin, Bowers, Kiah, Whiteley, Gordon, Colantonio, Simona, Bocik, William, Roberts, Rhonda, Hiltke, Tara, Boja, Emily, Rodriguez, Henry, McCormick, Frank, Holderfield, Matthew, Carr, Steven A., Koomen, John M., Paulovich, Amanda G.
Publicado 2021

Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability

por McDermott, Jason E., Arshad, Osama A., Petyuk, Vladislav A., Fu, Yi, Gritsenko, Marina A., Clauss, Therese R., Moore, Ronald J., Schepmoes, Athena A., Zhao, Rui, Monroe, Matthew E., Schnaubelt, Michael, Tsai, Chia-Feng, Payne, Samuel H., Huang, Chen, Wang, Liang-Bo, Foltz, Steven, Wyczalkowski, Matthew, Wu, Yige, Song, Ehwang, Brewer, Molly A., Thiagarajan, Mathangi, Kinsinger, Christopher R., Robles, Ana I., Boja, Emily S., Rodriguez, Henry, Chan, Daniel W., Zhang, Bing, Zhang, Zhen, Ding, Li, Smith, Richard D., Liu, Tao, Rodland, Karin D.
Publicado 2020

Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability

por McDermott, Jason E., Arshad, Osama A., Petyuk, Vladislav A., Fu, Yi, Gritsenko, Marina A., Clauss, Therese R., Moore, Ronald J., Schepmoes, Athena A., Zhao, Rui, Monroe, Matthew E., Schnaubelt, Michael, Tsai, Chia-Feng, Payne, Samuel H., Huang, Chen, Wang, Liang-Bo, Foltz, Steven, Wyczalkowski, Matthew, Wu, Yige, Song, Ehwang, Brewer, Molly A., Thiagarajan, Mathangi, Kinsinger, Christopher R., Robles, Ana I., Boja, Emily S., Rodriguez, Henry, Chan, Daniel W., Zhang, Bing, Zhang, Zhen, Ding, Li, Smith, Richard D., Liu, Tao, Rodland, Karin D.
Publicado 2020

Targeted Mass Spectrometry Enables Multiplexed Quantification of Immunomodulatory Proteins in Clinical Biospecimens

por Whiteaker, Jeffrey R., Lundeen, Rachel A., Zhao, Lei, Schoenherr, Regine M., Burian, Aura, Huang, Dongqing, Voytovich, Ulianna, Wang, Tao, Kennedy, Jacob J., Ivey, Richard G., Lin, Chenwei, Murillo, Oscar D., Lorentzen, Travis D., Thiagarajan, Mathangi, Colantonio, Simona, Caceres, Tessa W., Roberts, Rhonda R., Knotts, Joseph G., Reading, Joshua J., Kaczmarczyk, Jan A., Richardson, Christopher W., Garcia-Buntley, Sandra S., Bocik, William, Hewitt, Stephen M., Murray, Karen E., Do, Nhan, Brophy, Mary, Wilz, Stephen W., Yu, Hongbo, Ajjarapu, Samuel, Boja, Emily, Hiltke, Tara, Rodriguez, Henry, Paulovich, Amanda G.
Publicado 2021

Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts

por Tabb, David L., Wang, Xia, Carr, Steven A., Clauser, Karl R., Mertins, Philipp, Chambers, Matthew C., Holman, Jerry D., Wang, Jing, Zhang, Bing, Zimmerman, Lisa J., Chen, Xian, Gunawardena, Harsha P., Davies, Sherri R., Ellis, Matthew J. C., Li, Shunqiang, Townsend, R. Reid, Boja, Emily S., Ketchum, Karen A., Kinsinger, Christopher R., Mesri, Mehdi, Rodriguez, Henry, Liu, Tao, Kim, Sangtae, McDermott, Jason E., Payne, Samuel H., Petyuk, Vladislav A., Rodland, Karin D., Smith, Richard D., Yang, Feng, Chan, Daniel W., Zhang, Bai, Zhang, Hui, Zhang, Zhen, Zhou, Jian-Ying, Liebler, Daniel C.
Publicado 2015

Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach

por Carr, Steven A., Abbatiello, Susan E., Ackermann, Bradley L., Borchers, Christoph, Domon, Bruno, Deutsch, Eric W., Grant, Russell P., Hoofnagle, Andrew N., Hüttenhain, Ruth, Koomen, John M., Liebler, Daniel C., Liu, Tao, MacLean, Brendan, Mani, DR, Mansfield, Elizabeth, Neubert, Hendrik, Paulovich, Amanda G., Reiter, Lukas, Vitek, Olga, Aebersold, Ruedi, Anderson, Leigh, Bethem, Robert, Blonder, Josip, Boja, Emily, Botelho, Julianne, Boyne, Michael, Bradshaw, Ralph A., Burlingame, Alma L., Chan, Daniel, Keshishian, Hasmik, Kuhn, Eric, Kinsinger, Christopher, Lee, Jerry S.H., Lee, Sang-Won, Moritz, Robert, Oses-Prieto, Juan, Rifai, Nader, Ritchie, James, Rodriguez, Henry, Srinivas, Pothur R., Townsend, R. Reid, Van Eyk, Jennifer, Whiteley, Gordon, Wiita, Arun, Weintraub, Susan
Publicado 2014

Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy

por Krug, Karsten, Jaehnig, Eric J., Satpathy, Shankha, Blumenberg, Lili, Karpova, Alla, Anurag, Meenakshi, Miles, George, Mertins, Philipp, Geffen, Yifat, Tang, Lauren C., Heiman, David I., Cao, Song, Maruvka, Yosef E., Lei, Jonathan T., Huang, Chen, Kothadia, Ramani B., Colaprico, Antonio, Birger, Chet, Wang, Jarey, Dou, Yongchao, Wen, Bo, Shi, Zhiao, Liao, Yuxing, Wiznerowicz, Maciej, Wyczalkowski, Matthew A., Chen, Xi Steven, Kennedy, Jacob J., Paulovich, Amanda G., Thiagarajan, Mathangi, Kinsinger, Christopher R., Hiltke, Tara, Boja, Emily S., Mesri, Mehdi, Robles, Ana I., Rodriguez, Henry, Westbrook, Thomas F., Ding, Li, Getz, Gad, Clauser, Karl R., Fenyö, David, Ruggles, Kelly V., Zhang, Bing, Mani, D.R., Carr, Steven A., Ellis, Matthew J., Gillette, Michael A.
Publicado 2020