Brewhouse-Resident Microbiota Are Responsible for Multi-Stage Fermentation of American Coolship Ale

por Bokulich, Nicholas A., Bamforth, Charles W., Mills, David A.
Publicado 2012

Mapping microbial ecosystems and spoilage-gene flow in breweries highlights patterns of contamination and resistance

por Bokulich, Nicholas A, Bergsveinson, Jordyn, Ziola, Barry, Mills, David A
Publicado 2015

Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods

por Bokulich, Nicholas A., Ziemski, Michal, Robeson, Michael S., Kaehler, Benjamin D.
Publicado 2020

Beating Naive Bayes at Taxonomic Classification of 16S rRNA Gene Sequences

por Ziemski, Michal, Wisanwanichthan, Treepop, Bokulich, Nicholas A., Kaehler, Benjamin D.
Publicado 2021

Monitoring Seasonal Changes in Winery-Resident Microbiota

por Bokulich, Nicholas A., Ohta, Moe, Richardson, Paul M., Mills, David A.
Publicado 2013

Reproducible acquisition, management and meta-analysis of nucleotide sequence (meta)data using q2-fondue

por Ziemski, Michal, Adamov, Anja, Kim, Lina, Flörl, Lena, Bokulich, Nicholas A
Publicado 2022

Rapidly Processed Stool Swabs Approximate Stool Microbiota Profiles

por Bokulich, Nicholas A., Maldonado, Juan, Kang, Dae-Wook, Krajmalnik-Brown, Rosa, Caporaso, J. Gregory
Publicado 2019

Phylogenetic farming: Can evolutionary history predict crop rotation via the soil microbiome?

por Kaplan, Ian, Bokulich, Nicholas A., Caporaso, J. Gregory, Enders, Laramy S., Ghanem, Wadih, Ingerslew, Kathryn S.
Publicado 2020

Sources and Assembly of Microbial Communities in Vineyards as a Functional Component of Winegrowing

por Griggs, Reid G., Steenwerth, Kerri L., Mills, David A., Cantu, Dario, Bokulich, Nicholas A.
Publicado 2021

Next-Generation Sequencing Reveals Significant Bacterial Diversity of Botrytized Wine

por Bokulich, Nicholas A., Joseph, C. M. Lucy, Allen, Greg, Benson, Andrew K., Mills, David A.
Publicado 2012

Correction: Next-Generation Sequencing Reveals Significant Bacterial Diversity of Botrytized Wine

por Bokulich, Nicholas A., Joseph, C. M. Lucy, Allen, Greg, Benson, Andrew K., Mills, David A.
Publicado 2013

A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analyses

por O'Rourke, Devon R., Bokulich, Nicholas A., Jusino, Michelle A., MacManes, Matthew D., Foster, Jeffrey T.
Publicado 2020

Associations among Wine Grape Microbiome, Metabolome, and Fermentation Behavior Suggest Microbial Contribution to Regional Wine Characteristics

por Bokulich, Nicholas A., Collins, Thomas S., Masarweh, Chad, Allen, Greg, Heymann, Hildegarde, Ebeler, Susan E., Mills, David A.
Publicado 2016

q2-sample-classifier: machine-learning tools for microbiome classification and regression

por Bokulich, Nicholas A, Dillon, Matthew R, Bolyen, Evan, Kaehler, Benjamin D, Huttley, Gavin A, Caporaso, J Gregory
Publicado 2018

Species abundance information improves sequence taxonomy classification accuracy

por Kaehler, Benjamin D., Bokulich, Nicholas A., McDonald, Daniel, Knight, Rob, Caporaso, J. Gregory, Huttley, Gavin A.
Publicado 2019

Multi-omics data integration reveals metabolome as the top predictor of the cervicovaginal microenvironment

por Bokulich, Nicholas A., Łaniewski, Paweł, Adamov, Anja, Chase, Dana M., Caporaso, J. Gregory, Herbst-Kralovetz, Melissa M.
Publicado 2022

RESCRIPt: Reproducible sequence taxonomy reference database management

por Robeson, Michael S., O’Rourke, Devon R., Kaehler, Benjamin D., Ziemski, Michal, Dillon, Matthew R., Foster, Jeffrey T., Bokulich, Nicholas A.
Publicado 2021

Routine Habitat Change: A Source of Unrecognized Transient Alteration of Intestinal Microbiota in Laboratory Mice

por Ma, Betty W., Bokulich, Nicholas A., Castillo, Patricia A., Kananurak, Anchasa, Underwood, Mark A., Mills, David A., Bevins, Charles L.
Publicado 2012

Correction: Routine Habitat Change: A Source of Unrecognized Transient Alteration of Intestinal Microbiota in Laboratory Mice

por Ma, Betty W., Bokulich, Nicholas A., Castillo, Patricia A., Kananurak, Anchasa, Underwood, Mark A., Mills, David A., Bevins, Charles L.
Publicado 2013

q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data

por Bokulich, Nicholas A., Dillon, Matthew R., Zhang, Yilong, Rideout, Jai Ram, Bolyen, Evan, Li, Huilin, Albert, Paul S., Caporaso, J. Gregory
Publicado 2018