Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures

por De Las Rivas, Javier, Bonavides-Martínez, Cesar, Campos-Laborie, Francisco Jose
Publicado 2017

Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures

por De Las Rivas, Javier, Bonavides-Martínez, Cesar, Campos-Laborie, Francisco Jose
Publicado 2017

Sensory Systems and Transcriptional Regulation in Escherichia coli

por Femerling, Georgette, Gama-Castro, Socorro, Lara, Paloma, Ledezma-Tejeida, Daniela, Tierrafría, Víctor H., Muñiz-Rascado, Luis, Bonavides-Martínez, César, Collado-Vides, Julio
Publicado 2022

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

por Salgado, Heladia, Gama-Castro, Socorro, Peralta-Gil, Martín, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, Santos-Zavaleta, Alberto, Martínez-Flores, Irma, Jiménez-Jacinto, Verónica, Bonavides-Martínez, César, Segura-Salazar, Juan, Martínez-Antonio, Agustino, Collado-Vides, Julio
Publicado 2006

Multidimensional annotation of the Escherichia coli K-12 genome

por Karp, Peter D., Keseler, Ingrid M., Shearer, Alexander, Latendresse, Mario, Krummenacker, Markus, Paley, Suzanne M., Paulsen, Ian, Collado-Vides, Julio, Gama-Castro, Socorro, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Peñaloza-Spínola, Mónica I., Bonavides-Martinez, César, Ingraham, John
Publicado 2007

EcoCyc: A comprehensive view of Escherichia coli biology

por Keseler, Ingrid M., Bonavides-Martínez, César, Collado-Vides, Julio, Gama-Castro, Socorro, Gunsalus, Robert P., Johnson, D. Aaron, Krummenacker, Markus, Nolan, Laura M., Paley, Suzanne, Paulsen, Ian T., Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Shearer, Alexander Glennon, Karp, Peter D.
Publicado 2009

The EcoCyc Database in 2021

por Keseler, Ingrid M., Gama-Castro, Socorro, Mackie, Amanda, Billington, Richard, Bonavides-Martínez, César, Caspi, Ron, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E., Muñiz-Rascado, Luis, Ong, Wai Kit, Paley, Suzanne, Santos-Zavaleta, Alberto, Subhraveti, Pallavi, Tierrafría, Víctor H., Wolfe, Alan J., Collado-Vides, Julio, Paulsen, Ian T., Karp, Peter D.
Publicado 2021

EcoCyc: a comprehensive database of Escherichia coli biology

por Keseler, Ingrid M., Collado-Vides, Julio, Santos-Zavaleta, Alberto, Peralta-Gil, Martin, Gama-Castro, Socorro, Muñiz-Rascado, Luis, Bonavides-Martinez, César, Paley, Suzanne, Krummenacker, Markus, Altman, Tomer, Kaipa, Pallavi, Spaulding, Aaron, Pacheco, John, Latendresse, Mario, Fulcher, Carol, Sarker, Malabika, Shearer, Alexander G., Mackie, Amanda, Paulsen, Ian, Gunsalus, Robert P., Karp, Peter D.
Publicado 2011

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12

por Keseler, Ingrid M., Mackie, Amanda, Santos-Zavaleta, Alberto, Billington, Richard, Bonavides-Martínez, César, Caspi, Ron, Fulcher, Carol, Gama-Castro, Socorro, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Muñiz-Rascado, Luis, Ong, Quang, Paley, Suzanne, Peralta-Gil, Martin, Subhraveti, Pallavi, Velázquez-Ramírez, David A., Weaver, Daniel, Collado-Vides, Julio, Paulsen, Ian, Karp, Peter D.
Publicado 2017

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation

por Gama-Castro, Socorro, Jiménez-Jacinto, Verónica, Peralta-Gil, Martín, Santos-Zavaleta, Alberto, Peñaloza-Spinola, Mónica I., Contreras-Moreira, Bruno, Segura-Salazar, Juan, Muñiz-Rascado, Luis, Martínez-Flores, Irma, Salgado, Heladia, Bonavides-Martínez, César, Abreu-Goodger, Cei, Rodríguez-Penagos, Carlos, Miranda-Ríos, Juan, Morett, Enrique, Merino, Enrique, Huerta, Araceli M., Treviño-Quintanilla, Luis, Collado-Vides, Julio
Publicado 2008

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12

por Santos-Zavaleta, Alberto, Salgado, Heladia, Gama-Castro, Socorro, Sánchez-Pérez, Mishael, Gómez-Romero, Laura, Ledezma-Tejeida, Daniela, García-Sotelo, Jair Santiago, Alquicira-Hernández, Kevin, Muñiz-Rascado, Luis José, Peña-Loredo, Pablo, Ishida-Gutiérrez, Cecilia, Velázquez-Ramírez, David A, Del Moral-Chávez, Víctor, Bonavides-Martínez, César, Méndez-Cruz, Carlos-Francisco, Galagan, James, Collado-Vides, Julio
Publicado 2019

EcoCyc: fusing model organism databases with systems biology

por Keseler, Ingrid M., Mackie, Amanda, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Gama-Castro, Socorro, Bonavides-Martínez, César, Fulcher, Carol, Huerta, Araceli M., Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Muñiz-Rascado, Luis, Ong, Quang, Paley, Suzanne, Schröder, Imke, Shearer, Alexander G., Subhraveti, Pallavi, Travers, Mike, Weerasinghe, Deepika, Weiss, Verena, Collado-Vides, Julio, Gunsalus, Robert P., Paulsen, Ian, Karp, Peter D.
Publicado 2013

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

por Gama-Castro, Socorro, Salgado, Heladia, Santos-Zavaleta, Alberto, Ledezma-Tejeida, Daniela, Muñiz-Rascado, Luis, García-Sotelo, Jair Santiago, Alquicira-Hernández, Kevin, Martínez-Flores, Irma, Pannier, Lucia, Castro-Mondragón, Jaime Abraham, Medina-Rivera, Alejandra, Solano-Lira, Hilda, Bonavides-Martínez, César, Pérez-Rueda, Ernesto, Alquicira-Hernández, Shirley, Porrón-Sotelo, Liliana, López-Fuentes, Alejandra, Hernández-Koutoucheva, Anastasia, Moral-Chávez, Víctor Del, Rinaldi, Fabio, Collado-Vides, Julio
Publicado 2016

RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12

por Tierrafría, Víctor H., Rioualen, Claire, Salgado, Heladia, Lara, Paloma, Gama-Castro, Socorro, Lally, Patrick, Gómez-Romero, Laura, Peña-Loredo, Pablo, López-Almazo, Andrés G., Alarcón-Carranza, Gabriel, Betancourt-Figueroa, Felipe, Alquicira-Hernández, Shirley, Polanco-Morelos, J. Enrique, García-Sotelo, Jair, Gaytan-Nuñez, Estefani, Méndez-Cruz, Carlos-Francisco, Muñiz, Luis J., Bonavides-Martínez, César, Moreno-Hagelsieb, Gabriel, Galagan, James E., Wade, Joseph T., Collado-Vides, Julio
Publicado 2022

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

por Gama-Castro, Socorro, Salgado, Heladia, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, Solano-Lira, Hilda, Jimenez-Jacinto, Verónica, Weiss, Verena, García-Sotelo, Jair S., López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Alquicira-Hernández, Shirley, Medina-Rivera, Alejandra, Martínez-Flores, Irma, Alquicira-Hernández, Kevin, Martínez-Adame, Ruth, Bonavides-Martínez, César, Miranda-Ríos, Juan, Huerta, Araceli M., Mendoza-Vargas, Alfredo, Collado-Torres, Leonardo, Taboada, Blanca, Vega-Alvarado, Leticia, Olvera, Maricela, Olvera, Leticia, Grande, Ricardo, Morett, Enrique, Collado-Vides, Julio
Publicado 2011

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

por Salgado, Heladia, Peralta-Gil, Martin, Gama-Castro, Socorro, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, García-Sotelo, Jair S., Weiss, Verena, Solano-Lira, Hilda, Martínez-Flores, Irma, Medina-Rivera, Alejandra, Salgado-Osorio, Gerardo, Alquicira-Hernández, Shirley, Alquicira-Hernández, Kevin, López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Huerta, Araceli M., Bonavides-Martínez, César, Balderas-Martínez, Yalbi I., Pannier, Lucia, Olvera, Maricela, Labastida, Aurora, Jiménez-Jacinto, Verónica, Vega-Alvarado, Leticia, del Moral-Chávez, Victor, Hernández-Alvarez, Alfredo, Morett, Enrique, Collado-Vides, Julio
Publicado 2013