Explainable Deep Learning for Augmentation of Small RNA Expression Profiles

por Fiosina, Jelena, Fiosins, Maksims, Bonn, Stefan
Publicado 2020

Bias-invariant RNA-sequencing metadata annotation

por Wartmann, Hannes, Heins, Sven, Kloiber, Karin, Bonn, Stefan
Publicado 2021

Single-cell biology to decode the immune cellular composition of kidney inflammation

por Zhao, Yu, Panzer, Ulf, Bonn, Stefan, Krebs, Christian F.
Publicado 2021

Performance comparison of TCR-pMHC prediction tools reveals a strong data dependency

por Deng, Lihua, Ly, Cedric, Abdollahi, Sina, Zhao, Yu, Prinz, Immo, Bonn, Stefan
Publicado 2023

Pathogen detection in RNA-seq data with Pathonoia

por Liebhoff, Anna-Maria, Menden, Kevin, Laschtowitz, Alena, Franke, Andre, Schramm, Christoph, Bonn, Stefan
Publicado 2023

Realistic in silico generation and augmentation of single-cell RNA-seq data using generative adversarial networks

por Marouf, Mohamed, Machart, Pierre, Bansal, Vikas, Kilian, Christoph, Magruder, Daniel S., Krebs, Christian F., Bonn, Stefan
Publicado 2020

Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice

por Centeno, Tonatiuh Pena, Shomroni, Orr, Hennion, Magali, Halder, Rashi, Vidal, Ramon, Rahman, Raza-Ur, Bonn, Stefan
Publicado 2016

De-regulation of gene expression and alternative splicing affects distinct cellular pathways in the aging hippocampus

por Stilling, Roman M., Benito, Eva, Gertig, Michael, Barth, Jonas, Capece, Vincenzo, Burkhardt, Susanne, Bonn, Stefan, Fischer, Andre
Publicado 2014

Deep learning–based cell composition analysis from tissue expression profiles

por Menden, Kevin, Marouf, Mohamed, Oller, Sergio, Dalmia, Anupriya, Magruder, Daniel Sumner, Kloiber, Karin, Heutink, Peter, Bonn, Stefan
Publicado 2020

DISCERN: deep single-cell expression reconstruction for improved cell clustering and cell subtype and state detection

por Hausmann, Fabian, Ergen, Can, Khatri, Robin, Marouf, Mohamed, Hänzelmann, Sonja, Gagliani, Nicola, Huber, Samuel, Machart, Pierre, Bonn, Stefan
Publicado 2023

A novel method for culturing stellate astrocytes reveals spatially distinct Ca(2+) signaling and vesicle recycling in astrocytic processes

por Wolfes, Anne C., Ahmed, Saheeb, Awasthi, Ankit, Stahlberg, Markus A., Rajput, Ashish, Magruder, Daniel S., Bonn, Stefan, Dean, Camin
Publicado 2017

Protein Phosphorylation in Depolarized Synaptosomes: Dissecting Primary Effects of Calcium from Synaptic Vesicle Cycling

por Silbern, Ivan, Pan, Kuan-Ting, Fiosins, Maksims, Bonn, Stefan, Rizzoli, Silvio O., Fornasiero, Eugenio F., Urlaub, Henning, Jahn, Reinhard
Publicado 2021

Oasis 2: improved online analysis of small RNA-seq data

por Rahman, Raza-Ur, Gautam, Abhivyakti, Bethune, Jörn, Sattar, Abdul, Fiosins, Maksims, Magruder, Daniel Sumner, Capece, Vincenzo, Shomroni, Orr, Bonn, Stefan
Publicado 2018

Upregulation of miR-370 and miR-543 is associated with reduced expression of heat shock protein 40 in spinocerebellar ataxia type 3

por Evert, Bernd O., Nalavade, Rohit, Jungverdorben, Johannes, Matthes, Frank, Weber, Stephanie, Rajput, Ashish, Bonn, Stefan, Brüstle, Oliver, Peitz, Michael, Krauß, Sybille
Publicado 2018

Oasis: online analysis of small RNA deep sequencing data

por Capece, Vincenzo, Garcia Vizcaino, Julio C., Vidal, Ramon, Rahman, Raza-Ur, Pena Centeno, Tonatiuh, Shomroni, Orr, Suberviola, Irantzu, Fischer, Andre, Bonn, Stefan
Publicado 2015

Tagger—A Swiss army knife for multiomics to dissect cell type–specific mechanisms of gene expression in mice

por Kaczmarczyk, Lech, Bansal, Vikas, Rajput, Ashish, Rahman, Raza-ur, Krzyżak, Wiesław, Degen, Joachim, Poll, Stefanie, Fuhrmann, Martin, Bonn, Stefan, Jackson, Walker Scot
Publicado 2019

Correction: Tagger—A Swiss army knife for multiomics to dissect cell type–specific mechanisms of gene expression in mice

por Kaczmarczyk, Lech, Bansal, Vikas, Rajput, Ashish, Rahman, Raza-ur, Krzyżak, Wiesław, Degen, Joachim, Poll, Stefanie, Fuhrmann, Martin, Bonn, Stefan, Jackson, Walker Scot
Publicado 2022

The landscape of human mutually exclusive splicing

por Hatje, Klas, Rahman, Raza‐Ur, Vidal, Ramon O, Simm, Dominic, Hammesfahr, Björn, Bansal, Vikas, Rajput, Ashish, Mickael, Michel Edwar, Sun, Ting, Bonn, Stefan, Kollmar, Martin
Publicado 2017

Distinct translatome changes in specific neural populations precede electroencephalographic changes in prion-infected mice

por Kaczmarczyk, Lech, Schleif, Melvin, Dittrich, Lars, Williams, Rhiannan H., Koderman, Maruša, Bansal, Vikas, Rajput, Ashish, Schulte, Theresa, Jonson, Maria, Krost, Clemens, Testaquadra, Fabio J., Bonn, Stefan, Jackson, Walker S.
Publicado 2022

Endophilin-A Deficiency Induces the Foxo3a-Fbxo32 Network in the Brain and Causes Dysregulation of Autophagy and the Ubiquitin-Proteasome System

por Murdoch, John D., Rostosky, Christine M., Gowrisankaran, Sindhuja, Arora, Amandeep S., Soukup, Sandra-Fausia, Vidal, Ramon, Capece, Vincenzo, Freytag, Siona, Fischer, Andre, Verstreken, Patrik, Bonn, Stefan, Raimundo, Nuno, Milosevic, Ira
Publicado 2016