The Ruby UCSC API: accessing the UCSC genome database using Ruby

por Mishima, Hiroyuki, Aerts, Jan, Katayama, Toshiaki, Bonnal, Raoul J P, Yoshiura, Koh-ichiro
Publicado 2012

A Simplified Amino Acidic Alphabet to Unveil the T-Cells Receptors Antigens: A Computational Perspective

por Iannuzzi, Raffaele, Rossetti, Grazisa, Spitaleri, Andrea, Bonnal, Raoul J. P., Pagani, Massimiliano, Mollica, Luca
Publicado 2021

miRiadne: a web tool for consistent integration of miRNA nomenclature

por Bonnal, Raoul J. P., Rossi, Riccardo L., Carpi, Donatella, Ranzani, Valeria, Abrignani, Sergio, Pagani, Massimiliano
Publicado 2015

Sharing Programming Resources Between Bio* Projects

por Bonnal, Raoul J. P., Yates, Andrew, Goto, Naohisa, Gautier, Laurent, Willis, Scooter, Fields, Christopher, Katayama, Toshiaki, Prins, Pjotr
Publicado 2019

Novel interferon-sensitive genes unveiled by correlation-driven gene selection and systems biology

por Cheroni, Cristina, Manganaro, Lara, Donnici, Lorena, Bevilacqua, Valeria, Bonnal, Raoul J. P., Rossi, Riccardo L., De Francesco, Raffaele
Publicado 2021

Publisher Correction: Novel interferon-sensitive genes unveiled by correlation-driven gene selection and systems biology

por Cheroni, Cristina, Manganaro, Lara, Donnici, Lorena, Bevilacqua, Valeria, Bonnal, Raoul J. P., Rossi, Riccardo L., De Francesco, Raffaele
Publicado 2021

RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes

por Merelli, Ivan, Guffanti, Alessandro, Fabbri, Marco, Cocito, Andrea, Furia, Laura, Grazini, Ursula, Bonnal, Raoul J., Milanesi, Luciano, McBlane, Fraser
Publicado 2010

De novo transcriptome profiling of highly purified human lymphocytes primary cells

por Bonnal, Raoul J.P., Ranzani, Valeria, Arrigoni, Alberto, Curti, Serena, Panzeri, Ilaria, Gruarin, Paola, Abrignani, Sergio, Rossetti, Grazisa, Pagani, Massimiliano
Publicado 2015

OligoMinerApp: a web-server application for the design of genome-scale oligonucleotide in situ hybridization probes through the flexible OligoMiner environment

por Passaro, Marco, Martinovic, Martina, Bevilacqua, Valeria, Hershberg, Elliot A, Rossetti, Grazisa, Beliveau, Brian J, Bonnal, Raoul J P, Pagani, Massimiliano
Publicado 2020

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation

por Bolleman, Jerven T., Mungall, Christopher J., Strozzi, Francesco, Baran, Joachim, Dumontier, Michel, Bonnal, Raoul J. P., Buels, Robert, Hoehndorf, Robert, Fujisawa, Takatomo, Katayama, Toshiaki, Cock, Peter J. A.
Publicado 2016

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics

por Bonnal, Raoul J.P., Aerts, Jan, Githinji, George, Goto, Naohisa, MacLean, Dan, Miller, Chase A., Mishima, Hiroyuki, Pagani, Massimiliano, Ramirez-Gonzalez, Ricardo, Smant, Geert, Strozzi, Francesco, Syme, Rob, Vos, Rutger, Wennblom, Trevor J., Woodcroft, Ben J., Katayama, Toshiaki, Prins, Pjotr
Publicado 2012

Single cell-derived spheroids capture the self-renewing subpopulations of metastatic ovarian cancer

por Velletri, Tania, Villa, Carlo Emanuele, Cilli, Domenica, Barzaghi, Bianca, Lo Riso, Pietro, Lupia, Michela, Luongo, Raffaele, López-Tobón, Alejandro, De Simone, Marco, Bonnal, Raoul J. P., Marelli, Luca, Piccolo, Stefano, Colombo, Nicoletta, Pagani, Massimiliano, Cavallaro, Ugo, Minucci, Saverio, Testa, Giuseppe
Publicado 2021

A transcriptional sketch of a primary human breast cancer by 454 deep sequencing

por Guffanti, Alessandro, Iacono, Michele, Pelucchi, Paride, Kim, Namshin, Soldà, Giulia, Croft, Larry J, Taft, Ryan J, Rizzi, Ermanno, Askarian-Amiri, Marjan, Bonnal, Raoul J, Callari, Maurizio, Mignone, Flavio, Pesole, Graziano, Bertalot, Giovanni, Bernardi, Luigi Rossi, Albertini, Alberto, Lee, Christopher, Mattick, John S, Zucchi, Ileana, De Bellis, Gianluca
Publicado 2009

Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells

por De Simone, Marco, Arrigoni, Alberto, Rossetti, Grazisa, Gruarin, Paola, Ranzani, Valeria, Politano, Claudia, Bonnal, Raoul J.P., Provasi, Elena, Sarnicola, Maria Lucia, Panzeri, Ilaria, Moro, Monica, Crosti, Mariacristina, Mazzara, Saveria, Vaira, Valentina, Bosari, Silvano, Palleschi, Alessandro, Santambrogio, Luigi, Bovo, Giorgio, Zucchini, Nicola, Totis, Mauro, Gianotti, Luca, Cesana, Giancarlo, Perego, Roberto A., Maroni, Nirvana, Pisani Ceretti, Andrea, Opocher, Enrico, De Francesco, Raffaele, Geginat, Jens, Stunnenberg, Hendrik G., Abrignani, Sergio, Pagani, Massimiliano
Publicado 2016

BioHackathon 2015: Semantics of data for life sciences and reproducible research

por Vos, Rutger A., Katayama, Toshiaki, Mishima, Hiroyuki, Kawano, Shin, Kawashima, Shuichi, Kim, Jin-Dong, Moriya, Yuki, Tokimatsu, Toshiaki, Yamaguchi, Atsuko, Yamamoto, Yasunori, Wu, Hongyan, Amstutz, Peter, Antezana, Erick, Aoki, Nobuyuki P., Arakawa, Kazuharu, Bolleman, Jerven T., Bolton, Evan, Bonnal, Raoul J. P., Bono, Hidemasa, Burger, Kees, Chiba, Hirokazu, Cohen, Kevin B., Deutsch, Eric W., Fernández-Breis, Jesualdo T., Fu, Gang, Fujisawa, Takatomo, Fukushima, Atsushi, García, Alexander, Goto, Naohisa, Groza, Tudor, Hercus, Colin, Hoehndorf, Robert, Itaya, Kotone, Juty, Nick, Kawashima, Takeshi, Kim, Jee-Hyub, Kinjo, Akira R., Kotera, Masaaki, Kozaki, Kouji, Kumagai, Sadahiro, Kushida, Tatsuya, Lütteke, Thomas, Matsubara, Masaaki, Miyamoto, Joe, Mohsen, Attayeb, Mori, Hiroshi, Naito, Yuki, Nakazato, Takeru, Nguyen-Xuan, Jeremy, Nishida, Kozo, Nishida, Naoki, Nishide, Hiroyo, Ogishima, Soichi, Ohta, Tazro, Okuda, Shujiro, Paten, Benedict, Perret, Jean-Luc, Prathipati, Philip, Prins, Pjotr, Queralt-Rosinach, Núria, Shinmachi, Daisuke, Suzuki, Shinya, Tabata, Tsuyosi, Takatsuki, Terue, Taylor, Kieron, Thompson, Mark, Uchiyama, Ikuo, Vieira, Bruno, Wei, Chih-Hsuan, Wilkinson, Mark, Yamada, Issaku, Yamanaka, Ryota, Yoshitake, Kazutoshi, Yoshizawa, Akiyasu C., Dumontier, Michel, Kosaki, Kenjiro, Takagi, Toshihisa
Publicado 2020