Transcription factor-associated combinatorial epigenetic pattern reveals higher transcriptional activity of TCF7L2-regulated intragenic enhancers

por Liu, Qi, Bonneville, Russell, Li, Tianbao, Jin, Victor X.
Publicado 2017

W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data

por Lan, Xun, Bonneville, Russell, Apostolos, Jeff, Wu, Wangcheng, Jin, Victor X
Publicado 2011

Performance evaluation for rapid detection of pan-cancer microsatellite instability with MANTIS

por Kautto, Esko A., Bonneville, Russell, Miya, Jharna, Yu, Lianbo, Krook, Melanie A., Reeser, Julie W., Roychowdhury, Sameek
Publicado 2016

Hierarchical Modularity in ERα Transcriptional Network Is Associated with Distinct Functions and Implicates Clinical Outcomes

por Tang, Binhua, Hsu, Hang-Kai, Hsu, Pei-Yin, Bonneville, Russell, Chen, Su-Shing, Huang, Tim H-M., Jin, Victor X.
Publicado 2012

IntLIM: integration using linear models of metabolomics and gene expression data

por Siddiqui, Jalal K., Baskin, Elizabeth, Liu, Mingrui, Cantemir-Stone, Carmen Z., Zhang, Bofei, Bonneville, Russell, McElroy, Joseph P., Coombes, Kevin R., Mathé, Ewy A.
Publicado 2018

High Resolution Detection and Analysis of CpG Dinucleotides Methylation Using MBD-Seq Technology

por Lan, Xun, Adams, Christopher, Landers, Mark, Dudas, Miroslav, Krissinger, Daniel, Marnellos, George, Bonneville, Russell, Xu, Maoxiong, Wang, Junbai, Huang, Tim H.-M., Meredith, Gavin, Jin, Victor X.
Publicado 2011

Genomic characterization of metastatic ultra-hypermutated interdigitating dendritic cell sarcoma through rapid research autopsy

por Chen, Hui-Zi, Bonneville, Russell, Yu, Lianbo, Wing, Michele R., Reeser, Julie W., Krook, Melanie A., Miya, Jharna, Samorodnitsky, Eric, Smith, Amy, Martin, Dorrelyn, Dao, Thuy, Guo, Qishan, Liebner, David, Freud, Aharon G., Allenby, Patricia, Roychowdhury, Sameek
Publicado 2019

Tumor heterogeneity and acquired drug resistance in FGFR2-fusion-positive cholangiocarcinoma through rapid research autopsy

por Krook, Melanie A., Bonneville, Russell, Chen, Hui-Zi, Reeser, Julie W., Wing, Michele R., Martin, Dorrelyn M., Smith, Amy M., Dao, Thuy, Samorodnitsky, Eric, Paruchuri, Anoosha, Miya, Jharna, Baker, Kaitlin R., Yu, Lianbo, Timmers, Cynthia, Dittmar, Kristin, Freud, Aharon G., Allenby, Patricia, Roychowdhury, Sameek
Publicado 2019

Genomic and Transcriptomic Characterization of Relapsed SCLC Through Rapid Research Autopsy

por Chen, Hui-Zi, Bonneville, Russell, Paruchuri, Anoosha, Reeser, Julie W., Wing, Michele R., Samorodnitsky, Eric, Krook, Melanie A., Smith, Amy M., Dao, Thuy, Miya, Jharna, Wang, Walter, Yu, Lianbo, Freud, Aharon G., Allenby, Patricia, Cole, Sharon, Otterson, Gregory, Shields, Peter, Carbone, David P., Roychowdhury, Sameek
Publicado 2021