Contacts-based prediction of binding affinity in protein–protein complexes

por Vangone, Anna, Bonvin, Alexandre MJJ
Publicado 2015

Coarse-grained (hybrid) integrative modeling of biomolecular interactions

por Roel-Touris, Jorge, Bonvin, Alexandre M.J.J.
Publicado 2020

SAMPLEX: Automatic mapping of perturbed and unperturbed regions of proteins and complexes

por Krzeminski, Mickaël, Loth, Karine, Boelens, Rolf, Bonvin, Alexandre MJJ
Publicado 2010

Assessment of contact predictions in CASP12: Co‐evolution and deep learning coming of age

por Schaarschmidt, Joerg, Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Bonvin, Alexandre M.J.J.
Publicado 2017

PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes

por Jiménez-García, Brian, Elez, Katarina, Koukos, Panagiotis I, Bonvin, Alexandre Mjj, Vangone, Anna
Publicado 2019

iScore: An MPI supported software for ranking protein–protein docking models based on a random walk graph kernel and support vector machines

por Renaud, Nicolas, Jung, Yong, Honavar, Vasant, Geng, Cunliang, Bonvin, Alexandre M.J.J., Xue, Li C.
Publicado 2020

Molecular Insights Into Binding and Activation of the Human KCNQ2 Channel by Retigabine

por Garofalo, Barbara, Bonvin, Alexandre M.J.J., Bosin, Andrea, Di Giorgio, Francesco P., Ombrato, Rosella, Vargiu, Attilio V.
Publicado 2022

MTMDAT-HADDOCK: High-throughput, protein complex structure modeling based on limited proteolysis and mass spectrometry

por Hennig, Janosch, de Vries, Sjoerd J, Hennig, Klaus DM, Randles, Leah, Walters, Kylie J, Sunnerhagen, Maria, Bonvin, Alexandre MJJ
Publicado 2012

Structural basis of GM-CSF and IL-2 sequestration by the viral decoy receptor GIF

por Felix, Jan, Kandiah, Eaazhisai, De Munck, Steven, Bloch, Yehudi, van Zundert, Gydo C.P., Pauwels, Kris, Dansercoer, Ann, Novanska, Katka, Read, Randy J., Bonvin, Alexandre M.J.J., Vergauwen, Bjorn, Verstraete, Kenneth, Gutsche, Irina, Savvides, Savvas N.
Publicado 2016

Natural helix 9 mutants of PPARγ differently affect its transcriptional activity

por Broekema, Marjoleine F., Massink, Maarten P.G., Donato, Cinzia, de Ligt, Joep, Schaarschmidt, Joerg, Borgman, Anouska, Schooneman, Marieke G., Melchers, Diana, Gerding, Martin N., Houtman, René, Bonvin, Alexandre M.J.J., Majithia, Amit R., Monajemi, Houshang, van Haaften, Gijs W., Soeters, Maarten R., Kalkhoven, Eric
Publicado 2018

Dynamic Binding Mode of a Synaptotagmin-1-SNARE Complex in Solution

por Brewer, Kyle D., Bacaj, Taulant, Cavalli, Andrea, Camilloni, Carlo, Swarbrick, James D., Liu, Jin, Zhou, Amy, Zhou, Peng, Barlow, Nicholas, Xu, Junjie, Seven, Alpay B., Prinslow, Eric A., Voleti, Rashmi, Häussinger, Daniel, Bonvin, Alexandre M.J.J., Tomchick, Diana R., Vendruscolo, Michele, Graham, Bim, Südhof, Thomas C., Rizo, Josep
Publicado 2015

A novel antifolate suppresses growth of FPGS-deficient cells and overcomes methotrexate resistance

por van der Krift, Felix, Zijlmans, Dick W, Shukla, Rhythm, Javed, Ali, Koukos, Panagiotis I, Schwarz, Laura LE, Timmermans-Sprang, Elpetra PM, Maas, Peter EM, Gahtory, Digvijay, van den Nieuwboer, Maurits, Mol, Jan A, Strous, Ger J, Bonvin, Alexandre MJJ, van der Stelt, Mario, Veldhuizen, Edwin JA, Weingarth, Markus, Vermeulen, Michiel, Klumperman, Judith, Maurice, Madelon M
Publicado 2023

A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)

por Orengo, Christine, Velankar, Sameer, Wodak, Shoshana, Zoete, Vincent, Bonvin, Alexandre M.J.J., Elofsson, Arne, Feenstra, K. Anton, Gerloff, Dietland L., Hamelryck, Thomas, Hancock, John M., Helmer-Citterich, Manuela, Hospital, Adam, Orozco, Modesto, Perrakis, Anastassis, Rarey, Matthias, Soares, Claudio, Sussman, Joel L., Thornton, Janet M., Tuffery, Pierre, Tusnady, Gabor, Wierenga, Rikkert, Salminen, Tiina, Schneider, Bohdan
Publicado 2020

West-Life: A Virtual Research Environment for structural biology

por Morris, Chris, Andreetto, Paolo, Banci, Lucia, Bonvin, Alexandre M.J.J., Chojnowski, Grzegorz, Cano, Laura del, Carazo, José Marıa, Conesa, Pablo, Daenke, Susan, Damaskos, George, Giachetti, Andrea, Haley, Natalie E.C., Hekkelman, Maarten L., Heuser, Philipp, Joosten, Robbie P., Kouřil, Daniel, Křenek, Aleš, Kulhánek, Tomáš, Lamzin, Victor S., Nadzirin, Nurul, Perrakis, Anastassis, Rosato, Antonio, Sanderson, Fiona, Segura, Joan, Schaarschmidt, Joerg, Sobolev, Egor, Traldi, Sergio, Trellet, Mikael E., Velankar, Sameer, Verlato, Marco, Winn, Martyn
Publicado 2019

Emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions

por Dudas, Gytis, Hong, Samuel L., Potter, Barney I., Calvignac-Spencer, Sébastien, Niatou-Singa, Frédéric S., Tombolomako, Thais B., Fuh-Neba, Terence, Vickos, Ulrich, Ulrich, Markus, Leendertz, Fabian H., Khan, Kamran, Huber, Carmen, Watts, Alexander, Olendraitė, Ingrida, Snijder, Joost, Wijnant, Kim N., Bonvin, Alexandre M.J.J., Martres, Pascale, Behillil, Sylvie, Ayouba, Ahidjo, Maidadi, Martin Foudi, Djomsi, Dowbiss Meta, Godwe, Celestin, Butel, Christelle, Šimaitis, Aistis, Gabrielaitė, Miglė, Katėnaitė, Monika, Norvilas, Rimvydas, Raugaitė, Ligita, Koyaweda, Giscard Wilfried, Kandou, Jephté Kaleb, Jonikas, Rimvydas, Nasvytienė, Inga, Žemeckienė, Živilė, Gečys, Dovydas, Tamušauskaitė, Kamilė, Norkienė, Milda, Vasiliūnaitė, Emilija, Žiogienė, Danguolė, Timinskas, Albertas, Šukys, Marius, Šarauskas, Mantas, Alzbutas, Gediminas, Aziza, Adrienne Amuri, Lusamaki, Eddy Kinganda, Cigolo, Jean-Claude Makangara, Mawete, Francisca Muyembe, Lofiko, Emmanuel Lokilo, Kingebeni, Placide Mbala, Tamfum, Jean-Jacques Muyembe, Belizaire, Marie Roseline Darnycka, Essomba, René Ghislain, Assoumou, Marie Claire Okomo, Mboringong, Akenji Blaise, Dieng, Alle Baba, Juozapaitė, Dovilė, Hosch, Salome, Obama, Justino, Ayekaba, Mitoha Ondo’o, Naumovas, Daniel, Pautienius, Arnoldas, Rafaï, Clotaire Donatien, Vitkauskienė, Astra, Ugenskienė, Rasa, Gedvilaitė, Alma, Čereškevičius, Darius, Lesauskaitė, Vaiva, Žemaitis, Lukas, Griškevičius, Laimonas, Baele, Guy
Publicado 2021

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

por Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen‐You, Schneidman‐Duhovny, Dina, Sali, Andrej, Segura, Joan, Fernandez‐Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan‐Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie‐Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben‐Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung‐Rae, Roy, Amit, Han, Xusi, Esquivel‐Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero‐Durana, Miguel, Jiménez‐García, Brian, Moal, Iain H., Férnandez‐Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Roy Burman, Shourya S., Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.
Publicado 2016