Transform-MinER: transforming molecules in enzyme reactions

por Tyzack, Jonathan D, Ribeiro, Antonio J M, Borkakoti, Neera, Thornton, Janet M
Publicado 2018

Conformational Variation in Enzyme Catalysis: A Structural Study on Catalytic Residues

por Riziotis, Ioannis G., Ribeiro, António J.M., Borkakoti, Neera, Thornton, Janet M.
Publicado 2022

Ranking Enzyme Structures in the PDB by Bound Ligand Similarity to Biological Substrates

por Tyzack, Jonathan D., Fernando, Laurent, Ribeiro, Antonio J.M., Borkakoti, Neera, Thornton, Janet M.
Publicado 2018

Finding enzyme cofactors in Protein Data Bank

por Mukhopadhyay, Abhik, Borkakoti, Neera, Pravda, Lukáš, Tyzack, Jonathan D, Thornton, Janet M, Velankar, Sameer
Publicado 2019

EzMechanism: an automated tool to propose catalytic mechanisms of enzyme reactions

por Ribeiro, Antonio J. M., Riziotis, Ioannis G., Tyzack, Jonathan D., Borkakoti, Neera, Thornton, Janet M.
Publicado 2023

Using mechanism similarity to understand enzyme evolution

por Ribeiro, António J. M., Riziotis, Ioannis G., Tyzack, Jonathan D., Borkakoti, Neera, Thornton, Janet M.
Publicado 2022

A structural biology community assessment of AlphaFold2 applications

por Akdel, Mehmet, Pires, Douglas E. V., Pardo, Eduard Porta, Jänes, Jürgen, Zalevsky, Arthur O., Mészáros, Bálint, Bryant, Patrick, Good, Lydia L., Laskowski, Roman A., Pozzati, Gabriele, Shenoy, Aditi, Zhu, Wensi, Kundrotas, Petras, Serra, Victoria Ruiz, Rodrigues, Carlos H. M., Dunham, Alistair S., Burke, David, Borkakoti, Neera, Velankar, Sameer, Frost, Adam, Basquin, Jérôme, Lindorff-Larsen, Kresten, Bateman, Alex, Kajava, Andrey V., Valencia, Alfonso, Ovchinnikov, Sergey, Durairaj, Janani, Ascher, David B., Thornton, Janet M., Davey, Norman E., Stein, Amelie, Elofsson, Arne, Croll, Tristan I., Beltrao, Pedro
Publicado 2022