Evolution of Drug Resistance in Tuberculosis: Recent Progress and Implications for Diagnosis and Therapy

por Trauner, Andrej, Borrell, Sonia, Reither, Klaus, Gagneux, Sebastien
Publicado 2014

The within-host evolution of antimicrobial resistance in Mycobacterium tuberculosis

por Castro, Rhastin A D, Borrell, Sonia, Gagneux, Sebastien
Publicado 2020

KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes

por Steiner, Andreas, Stucki, David, Coscolla, Mireia, Borrell, Sonia, Gagneux, Sebastien
Publicado 2014

Evaluation of Customised Lineage-Specific Sets of MIRU-VNTR Loci for Genotyping Mycobacterium tuberculosis Complex Isolates in Ghana

por Asante-Poku, Adwoa, Nyaho, Michael Selasi, Borrell, Sonia, Comas, Iñaki, Gagneux, Sebastien, Yeboah-Manu, Dorothy
Publicado 2014

First Insights into the Phylogenetic Diversity of Mycobacterium tuberculosis in Nepal

por Malla, Bijaya, Stucki, David, Borrell, Sonia, Feldmann, Julia, Maharjan, Bhagwan, Shrestha, Bhawana, Fenner, Lukas, Gagneux, Sebastien
Publicado 2012

Classifying recurrent Mycobacterium tuberculosis cases in Georgia using MIRU-VNTR typing

por Maghradze, Nino, Jugheli, Levan, Borrell, Sonia, Tukvadze, Nestani, Aspindzelashvili, Rusudan, Avaliani, Zaza, Reither, Klaus, Gagneux, Sebastien
Publicado 2019

Developing customized stepwise MIRU-VNTR typing for tuberculosis surveillance in Georgia

por Maghradze, Nino, Jugheli, Levan, Borrell, Sonia, Tukvadze, Nestani, Kempker, Russell R., Blumberg, Henry M., Gagneux, Sebastien
Publicado 2022

Whole-genome sequencing of rifampicin-resistant M. tuberculosis strains identifies compensatory mutations in RNA polymerase

por Comas, Iñaki, Borrell, Sonia, Roetzer, Andreas, Rose, Graham, Malla, Bijaya, Kato-Maeda, Midori, Galagan, James, Niemann, Stefan, Gagneux, Sebastien
Publicado 2011

Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis

por Payne, Joshua L., Menardo, Fabrizio, Trauner, Andrej, Borrell, Sonia, Gygli, Sebastian M., Loiseau, Chloe, Gagneux, Sebastien, Hall, Alex R.
Publicado 2019

“Pseudo-Beijing”: Evidence for Convergent Evolution in the Direct Repeat Region of Mycobacterium tuberculosis

por Fenner, Lukas, Malla, Bijaya, Ninet, Béatrice, Dubuis, Olivier, Stucki, David, Borrell, Sonia, Huna, Thembela, Bodmer, Thomas, Egger, Matthias, Gagneux, Sebastien
Publicado 2011

Epistasis between antibiotic resistance mutations drives the evolution of extensively drug-resistant tuberculosis

por Borrell, Sònia, Teo, Youjin, Giardina, Federica, Streicher, Elizabeth M., Klopper, Marisa, Feldmann, Julia, Müller, Borna, Victor, Tommie C., Gagneux, Sebastien
Publicado 2013

The Genetic Background Modulates the Evolution of Fluoroquinolone-Resistance in Mycobacterium tuberculosis

por Castro, Rhastin A D, Ross, Amanda, Kamwela, Lujeko, Reinhard, Miriam, Loiseau, Chloé, Feldmann, Julia, Borrell, Sonia, Trauner, Andrej, Gagneux, Sebastien
Publicado 2020

Molecular characterization of bovine tuberculosis strains in two slaughterhouses in Morocco

por Yahyaoui-Azami, Hind, Aboukhassib, Hamid, Bouslikhane, Mohammed, Berrada, Jaouad, Rami, Soukaina, Reinhard, Miriam, Gagneux, Sebastien, Feldmann, Julia, Borrell, Sonia, Zinsstag, Jakob
Publicado 2017

Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity

por Menardo, Fabrizio, Loiseau, Chloé, Brites, Daniela, Coscolla, Mireia, Gygli, Sebastian M., Rutaihwa, Liliana K., Trauner, Andrej, Beisel, Christian, Borrell, Sonia, Gagneux, Sebastien
Publicado 2018

Two New Rapid SNP-Typing Methods for Classifying Mycobacterium tuberculosis Complex into the Main Phylogenetic Lineages

por Stucki, David, Malla, Bijaya, Hostettler, Simon, Huna, Thembela, Feldmann, Julia, Yeboah-Manu, Dorothy, Borrell, Sonia, Fenner, Lukas, Comas, Iñaki, Coscollà, Mireia, Gagneux, Sebastien
Publicado 2012

A Case of Cutaneous Tuberculosis in a Buruli Ulcer–Endemic Area

por Bratschi, Martin W., Njih Tabah, Earnest, Bolz, Miriam, Stucki, David, Borrell, Sonia, Gagneux, Sebastien, Noumen-Djeunga, Blanbin, Junghanss, Thomas, Um Boock, Alphonse, Pluschke, Gerd
Publicado 2012

Mycobacterium africanum Is Associated with Patient Ethnicity in Ghana

por Asante-Poku, Adwoa, Yeboah-Manu, Dorothy, Otchere, Isaac Darko, Aboagye, Samuel Y., Stucki, David, Hattendorf, Jan, Borrell, Sonia, Feldmann, Julia, Danso, Emelia, Gagneux, Sebastien
Publicado 2015

Drug resistance-conferring mutations in Mycobacterium tuberculosis from Madang, Papua New Guinea

por Ballif, Marie, Harino, Paul, Ley, Serej, Coscolla, Mireia, Niemann, Stefan, Carter, Robyn, Coulter, Christopher, Borrell, Sonia, Siba, Peter, Phuanukoonnon, Suparat, Gagneux, Sebastien, Beck, Hans-Peter
Publicado 2012

Expression Dysregulation as a Mediator of Fitness Costs in Antibiotic Resistance

por Trauner, Andrej, Banaei-Esfahani, Amir, Gygli, Sebastian M., Warmer, Philipp, Feldmann, Julia, Zampieri, Mattia, Borrell, Sonia, Collins, Ben C., Beisel, Christian, Aebersold, Ruedi, Gagneux, Sebastien
Publicado 2021

Reduced transmission of Mycobacterium africanum compared to Mycobacterium tuberculosis in urban West Africa

por Asare, Prince, Asante-Poku, Adwoa, Prah, Diana Ahu, Borrell, Sonia, Osei-Wusu, Stephen, Otchere, Isaac Darko, Forson, Audrey, Adjapong, Gloria, Koram, Kwadwo Ansah, Gagneux, Sebastien, Yeboah-Manu, Dorothy
Publicado 2018