PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly

por Borry, Maxime, Hübner, Alexander, Rohrlach, Adam B., Warinner, Christina
Publicado 2021

Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager

por Fellows Yates, James A., Lamnidis, Thiseas C., Borry, Maxime, Andrades Valtueña, Aida, Fagernäs, Zandra, Clayton, Stephen, Garcia, Maxime U., Neukamm, Judith, Peltzer, Alexander
Publicado 2021

Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir

por Fellows Yates, James A., Andrades Valtueña, Aida, Vågene, Åshild J., Cribdon, Becky, Velsko, Irina M., Borry, Maxime, Bravo-Lopez, Miriam J., Fernandez-Guerra, Antonio, Green, Eleanor J., Ramachandran, Shreya L., Heintzman, Peter D., Spyrou, Maria A., Hübner, Alexander, Gancz, Abigail S., Hider, Jessica, Allshouse, Aurora F., Zaro, Valentina, Warinner, Christina
Publicado 2021

CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content

por Borry, Maxime, Cordova, Bryan, Perri, Angela, Wibowo, Marsha, Prasad Honap, Tanvi, Ko, Jada, Yu, Jie, Britton, Kate, Girdland-Flink, Linus, Power, Robert C., Stuijts, Ingelise, Salazar-García, Domingo C., Hofman, Courtney, Hagan, Richard, Samdapawindé Kagoné, Thérèse, Meda, Nicolas, Carabin, Helene, Jacobson, David, Reinhard, Karl, Lewis, Cecil, Kostic, Aleksandar, Jeong, Choongwon, Herbig, Alexander, Hübner, Alexander, Warinner, Christina
Publicado 2020

Reconstruction of ancient microbial genomes from the human gut

por Wibowo, Marsha C., Yang, Zhen, Borry, Maxime, Hübner, Alexander, Huang, Kun D., Tierney, Braden T., Zimmerman, Samuel, Barajas-Olmos, Francisco, Contreras-Cubas, Cecilia, García-Ortiz, Humberto, Martínez-Hernández, Angélica, Luber, Jacob M., Kirstahler, Philipp, Blohm, Tre, Smiley, Francis E., Arnold, Richard, Ballal, Sonia A., Pamp, Sünje Johanna, Russ, Julia, Maixner, Frank, Rota-Stabelli, Omar, Segata, Nicola, Reinhard, Karl, Orozco, Lorena, Warinner, Christina, Snow, Meradeth, LeBlanc, Steven, Kostic, Aleksandar D.
Publicado 2021