Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems

por Dalcin Martins, Paula, Danczak, Robert E., Roux, Simon, Frank, Jeroen, Borton, Mikayla A., Wolfe, Richard A., Burris, Marie N., Wilkins, Michael J.
Publicado 2018

Degradation of biological macromolecules supports uncultured microbial populations in Guaymas Basin hydrothermal sediments

por Pérez Castro, Sherlynette, Borton, Mikayla A., Regan, Kathleen, Hrabe de Angelis, Isabella, Wrighton, Kelly C., Teske, Andreas P., Strous, Marc, Ruff, S. Emil
Publicado 2021

Microbial colonization and persistence in deep fractured shales is guided by metabolic exchanges and viral predation

por Amundson, Kaela K., Borton, Mikayla A., Daly, Rebecca A., Hoyt, David W., Wong, Allison, Eder, Elizabeth, Moore, Joseph, Wunch, Kenneth, Wrighton, Kelly C., Wilkins, Michael J.
Publicado 2022

Correction to: Microbial colonization and persistence in deep fractured shales is guided by metabolic exchanges and viral predation

por Amundson, Kaela K., Borton, Mikayla A., Daly, Rebecca A., Hoyt, David W., Wong, Allison, Eder, Elizabeth, Moore, Joseph, Wunch, Kenneth, Wrighton, Kelly C., Wilkins, Michael J.
Publicado 2022

Genome-Resolved Metagenomics Extends the Environmental Distribution of the Verrucomicrobia Phylum to the Deep Terrestrial Subsurface

por Nixon, Sophie L., Daly, Rebecca A., Borton, Mikayla A., Solden, Lindsey M., Welch, Susan A., Cole, David R., Mouser, Paula J., Wilkins, Michael J., Wrighton, Kelly C.
Publicado 2019

Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland

por Smith, Garrett J., Angle, Jordan C., Solden, Lindsey M., Borton, Mikayla A., Morin, Timothy H., Daly, Rebecca A., Johnston, Michael D., Stefanik, Kay C., Wolfe, Richard, Gil, Bohrer, Wrighton, Kelly C.
Publicado 2018

Chemical and pathogen-induced inflammation disrupt the murine intestinal microbiome

por Borton, Mikayla A., Sabag-Daigle, Anice, Wu, Jikang, Solden, Lindsey M., O’Banion, Bridget S., Daly, Rebecca A., Wolfe, Richard A., Gonzalez, Juan F., Wysocki, Vicki H., Ahmer, Brian M. M., Wrighton, Kelly C.
Publicado 2017

Exposing new taxonomic variation with inflammation — a murine model-specific genome database for gut microbiome researchers

por Leleiwi, Ikaia, Rodriguez-Ramos, Josué, Shaffer, Michael, Sabag-Daigle, Anice, Kokkinias, Katherine, Flynn, Rory M., Daly, Rebecca A., Kop, Linnea F. M., Solden, Lindsey M., Ahmer, Brian M. M., Borton, Mikayla A., Wrighton, Kelly C.
Publicado 2023

Targeted curation of the gut microbial gene content modulating human cardiovascular disease

por Borton, Mikayla A., Shaffer, Michael, Hoyt, David W., Jiang, Ruisheng, Ellenbogen, Jared B., Purvine, Samuel, Nicora, Carrie D., Eder, Elizabeth K., Wong, Allison R., Smulian, A. George, Lipton, Mary S., Krzycki, Joseph A., Wrighton, Kelly C.
Publicado 2023

kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase

por Shaffer, Michael, Borton, Mikayla A, Bolduc, Ben, Faria, José P, Flynn, Rory M, Ghadermazi, Parsa, Edirisinghe, Janaka N, Wood-Charlson, Elisha M, Miller, Christopher S, Chan, Siu Hung Joshua, Sullivan, Matthew B, Henry, Christopher S, Wrighton, Kelly C
Publicado 2023

Uncovering the Diversity and Activity of Methylotrophic Methanogens in Freshwater Wetland Soils

por Narrowe, Adrienne B., Borton, Mikayla A., Hoyt, David W., Smith, Garrett J., Daly, Rebecca A., Angle, Jordan C., Eder, Elizabeth K., Wong, Allison R., Wolfe, Richard A., Pappas, Alexandra, Bohrer, Gil, Miller, Christopher S., Wrighton, Kelly C.
Publicado 2019

Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions

por Angle, Jordan C., Morin, Timothy H., Solden, Lindsey M., Narrowe, Adrienne B., Smith, Garrett J., Borton, Mikayla A., Rey-Sanchez, Camilo, Daly, Rebecca A., Mirfenderesgi, Golnazalsdat, Hoyt, David W., Riley, William J., Miller, Christopher S., Bohrer, Gil, Wrighton, Kelly C.
Publicado 2017

Decrypting bacterial polyphenol metabolism in an anoxic wetland soil

por McGivern, Bridget B., Tfaily, Malak M., Borton, Mikayla A., Kosina, Suzanne M., Daly, Rebecca A., Nicora, Carrie D., Purvine, Samuel O., Wong, Allison R., Lipton, Mary S., Hoyt, David W., Northen, Trent R., Hagerman, Ann E., Wrighton, Kelly C.
Publicado 2021

Sulfide Generation by Dominant Halanaerobium Microorganisms in Hydraulically Fractured Shales

por Booker, Anne E., Borton, Mikayla A., Daly, Rebecca A., Welch, Susan A., Nicora, Carrie D., Hoyt, David W., Wilson, Travis, Purvine, Samuel O., Wolfe, Richard A., Sharma, Shikha, Mouser, Paula J., Cole, David R., Lipton, Mary S., Wrighton, Kelly C., Wilkins, Michael J.
Publicado 2017

Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments

por Rodríguez-Ramos, Josué A., Borton, Mikayla A., McGivern, Bridget B., Smith, Garrett J., Solden, Lindsey M., Shaffer, Michael, Daly, Rebecca A., Purvine, Samuel O., Nicora, Carrie D., Eder, Elizabeth K., Lipton, Mary, Hoyt, David W., Stegen, James C., Wrighton, Kelly C.
Publicado 2022

Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales

por Borton, Mikayla A., Hoyt, David W., Roux, Simon, Daly, Rebecca A., Welch, Susan A., Nicora, Carrie D., Purvine, Samuel, Eder, Elizabeth K., Hanson, Andrea J., Sheets, Julie M., Morgan, David M., Wolfe, Richard A., Sharma, Shikha, Carr, Timothy R., Cole, David R., Mouser, Paula J., Lipton, Mary S., Wilkins, Michael J., Wrighton, Kelly C.
Publicado 2018

DRAM for distilling microbial metabolism to automate the curation of microbiome function

por Shaffer, Michael, Borton, Mikayla A, McGivern, Bridget B, Zayed, Ahmed A, La Rosa, Sabina Leanti, Solden, Lindsey M, Liu, Pengfei, Narrowe, Adrienne B, Rodríguez-Ramos, Josué, Bolduc, Benjamin, Gazitúa, M Consuelo, Daly, Rebecca A, Smith, Garrett J, Vik, Dean R, Pope, Phil B, Sullivan, Matthew B, Roux, Simon, Wrighton, Kelly C
Publicado 2020

Clades of huge phages from across Earth’s ecosystems

por Al-Shayeb, Basem, Sachdeva, Rohan, Chen, Lin-Xing, Ward, Fred, Munk, Patrick, Devoto, Audra, Castelle, Cindy J., Olm, Matthew R., Bouma-Gregson, Keith, Amano, Yuki, He, Christine, Méheust, Raphaël, Brooks, Brandon, Thomas, Alex, Lavy, Adi, Matheus-Carnevali, Paula, Sun, Christine, Goltsman, Daniela S. A., Borton, Mikayla A., Sharrar, Allison, Jaffe, Alexander L., Nelson, Tara C., Kantor, Rose, Keren, Ray, Lane, Katherine R., Farag, Ibrahim F., Lei, Shufei, Finstad, Kari, Amundson, Ronald, Anantharaman, Karthik, Zhou, Jinglie, Probst, Alexander J., Power, Mary E., Tringe, Susannah G., Li, Wen-Jun, Wrighton, Kelly, Harrison, Sue, Morowitz, Michael, Relman, David A., Doudna, Jennifer A., Lehours, Anne-Catherine, Warren, Lesley, Cate, Jamie H. D., Santini, Joanne M., Banfield, Jillian F.
Publicado 2020