High-resolution transcriptional landscape of xeno-free human induced pluripotent stem cell-derived cerebellar organoids

por Nayler, Samuel, Agarwal, Devika, Curion, Fabiola, Bowden, Rory, Becker, Esther B. E.
Publicado 2021

Targeted RNA sequencing enhances gene expression profiling of ultra-low input samples

por Curion, Fabiola, Handel, Adam E, Attar, Moustafa, Gallone, Giuseppe, Bowden, Rory, Cader, M. Zameel, Clark, Michael B
Publicado 2020

Improved workflows for high throughput library preparation using the transposome-based nextera system

por Lamble, Sarah, Batty, Elizabeth, Attar, Moustafa, Buck, David, Bowden, Rory, Lunter, Gerton, Crook, Derrick, El-Fahmawi, Bassam, Piazza, Paolo
Publicado 2013

Oxford Nanopore MinION Sequencing Enables Rapid Whole Genome Assembly of Rickettsia typhi in a Resource-Limited Setting

por Elliott, Ivo, Batty, Elizabeth M., Ming, Damien, Robinson, Matthew T., Nawtaisong, Pruksa, de Cesare, Mariateresa, Newton, Paul N., Bowden, Rory
Publicado 2020

Genomic Tools for Evolution and Conservation in the Chimpanzee: Pan troglodytes ellioti Is a Genetically Distinct Population

por Bowden, Rory, MacFie, Tammie S., Myers, Simon, Hellenthal, Garrett, Nerrienet, Eric, Bontrop, Ronald E., Freeman, Colin, Donnelly, Peter, Mundy, Nicholas I.
Publicado 2012

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens

por Bonsall, David, Ansari, M. Azim, Ip, Camilla, Trebes, Amy, Brown, Anthony, Klenerman, Paul, Buck, David, Piazza, Paolo, Barnes, Eleanor, Bowden, Rory
Publicado 2015

Evolutionary dynamics of Enterococcus faecium reveals complex genomic relationships between isolates with independent emergence of vancomycin resistance

por van Hal, Sebastiaan J., Ip, Camilla L. C., Ansari, M. Azim, Wilson, Daniel J., Espedido, Bjorn A., Jensen, Slade O., Bowden, Rory
Publicado 2016

Characterization of hepatitis C virus resistance to grazoprevir reveals complex patterns of mutations following on-treatment breakthrough that are not observed at relapse

por Bonsall, David, Black, Stuart, Howe, Anita YM, Chase, Robert, Ingravallo, Paul, Pak, Irene, Brown, Anthony, Smith, David A, Bowden, Rory, Barnes, Eleanor
Publicado 2018

A single-cell atlas of the human substantia nigra reveals cell-specific pathways associated with neurological disorders

por Agarwal, Devika, Sandor, Cynthia, Volpato, Viola, Caffrey, Tara M., Monzón-Sandoval, Jimena, Bowden, Rory, Alegre-Abarrategui, Javier, Wade-Martins, Richard, Webber, Caleb
Publicado 2020

Prevalence of Staphylococcus aureus protein A (spa) mutants in the community and hospitals in Oxfordshire

por Votintseva, Antonina A, Fung, Rowena, Miller, Ruth R, Knox, Kyle, Godwin, Heather, Wyllie, David H, Bowden, Rory, Crook, Derrick W, Walker, A Sarah
Publicado 2014

Lineage‐specific plasmid acquisition and the evolution of specialized pathogens in Bacillus thuringiensis and the Bacillus cereus group

por Méric, Guillaume, Mageiros, Leonardos, Pascoe, Ben, Woodcock, Dan J., Mourkas, Evangelos, Lamble, Sarah, Bowden, Rory, Jolley, Keith A., Raymond, Ben, Sheppard, Samuel K.
Publicado 2018

Impact of Interferon Lambda 4 Genotype on Interferon‐Stimulated Gene Expression During Direct‐Acting Antiviral Therapy for Hepatitis C

por Ramamurthy, Narayan, Marchi, Emanuele, Ansari, M. Azim, Pedergnana, Vincent, Mclean, Angela, Hudson, Emma, Bowden, Rory, Spencer, Chris C.A., Barnes, Eleanor, Klenerman, Paul
Publicado 2018

Prolonged Zika Virus RNA Detection in Semen of Immunosuppressed Patient

por Petridou, Christina, Bonsall, David, Ahmed, Aleem, Roberts, Mark, Bell, Carolyn, de Cesare, Mariateresa, Bowden, Rory, Graham, Victoria, Bailey, Daniel, Simpson, Andrew, Aarons, Emma
Publicado 2019

Recombination and Population Structure in Salmonella enterica

por Didelot, Xavier, Bowden, Rory, Street, Teresa, Golubchik, Tanya, Spencer, Chris, McVean, Gil, Sangal, Vartul, Anjum, Muna F., Achtman, Mark, Falush, Daniel, Donnelly, Peter
Publicado 2011

Characterization of Hepatitis C Virus Recombination in Cameroon by Use of Nonspecific Next-Generation Sequencing

por Iles, James C., Njouom, Richard, Foupouapouognigni, Yacouba, Bonsall, David, Bowden, Rory, Trebes, Amy, Piazza, Paolo, Barnes, Ellie, Pépin, Jacques, Klenerman, Paul, Pybus, Oliver G.
Publicado 2015

Targeted capture and sequencing of Orientia tsutsugamushi genomes from chiggers and humans

por Elliott, Ivo, Thangnimitchok, Neeranuch, de Cesare, Mariateresa, Linsuwanon, Piyada, Paris, Daniel H., Day, Nicholas P.J., Newton, Paul N., Bowden, Rory, Batty, Elizabeth M.
Publicado 2021

scPipe: an extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor

por Amarasinghe, Shanika L, Yang, Phil, Voogd, Oliver, Yang, Haoyu, Du, Mei R M, Su, Shian, Brown, Daniel V, Jabbari, Jafar S, Bowden, Rory, Ritchie, Matthew E
Publicado 2023

Dynamics of acquisition and loss of carriage of Staphylococcus aureus strains in the community: The effect of clonal complex()()

por Miller, Ruth R., Walker, A. Sarah, Godwin, Heather, Fung, Rowena, Votintseva, Antonina, Bowden, Rory, Mant, David, Peto, Timothy E.A., Crook, Derrick W., Knox, Kyle
Publicado 2014

Transcriptomic profiling of purified patient-derived dopamine neurons identifies convergent perturbations and therapeutics for Parkinson’s disease

por Sandor, Cynthia, Robertson, Paul, Lang, Charmaine, Heger, Andreas, Booth, Heather, Vowles, Jane, Witty, Lorna, Bowden, Rory, Hu, Michele, Cowley, Sally A., Wade-Martins, Richard, Webber, Caleb
Publicado 2017

Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi

por Batty, Elizabeth M., Chaemchuen, Suwittra, Blacksell, Stuart, Richards, Allen L., Paris, Daniel, Bowden, Rory, Chan, Caroline, Lachumanan, Ramkumar, Day, Nicholas, Donnelly, Peter, Chen, Swaine, Salje, Jeanne
Publicado 2018