Exometabolomic Analysis of Cross-Feeding Metabolites

por Lubbe, Andrea, Bowen, Benjamin P., Northen, Trent
Publicado 2017

Improved genome annotation through untargeted detection of pathway-specific metabolites

por Bowen, Benjamin P, Fischer, Curt R, Baran, Richard, Banfield, Jillian F, Northen, Trent
Publicado 2011

Analysis of Metabolomics Datasets with High-Performance Computing and Metabolite Atlases

por Yao, Yushu, Sun, Terence, Wang, Tony, Ruebel, Oliver, Northen, Trent, Bowen, Benjamin P.
Publicado 2015

Linking soil biology and chemistry in biological soil crust using isolate exometabolomics

por Swenson, Tami L., Karaoz, Ulas, Swenson, Joel M., Bowen, Benjamin P., Northen, Trent R.
Publicado 2018

Quantitative Tracking of Isotope Flows in Proteomes of Microbial Communities

por Pan, Chongle, Fischer, Curt R., Hyatt, Doug, Bowen, Benjamin P., Hettich, Robert L., Banfield, Jillian F.
Publicado 2011

Dynamic substrate preferences predict metabolic properties of a simple microbial consortium

por Erbilgin, Onur, Bowen, Benjamin P., Kosina, Suzanne M., Jenkins, Stefan, Lau, Rebecca K., Northen, Trent R.
Publicado 2017

Mass spectrometry imaging–based assays for aminotransferase activity reveal a broad substrate spectrum for a previously uncharacterized enzyme

por de Raad, Markus, Koper, Kaan, Deng, Kai, Bowen, Benjamin P., Maeda, Hiroshi A., Northen, Trent R.
Publicado 2023

BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring

por Harwood, Thomas V., Treen, Daniel G. C., Wang, Mingxun, de Jong, Wibe, Northen, Trent R., Bowen, Benjamin P.
Publicado 2023

Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces

por Chevrette, Marc G., Carlos-Shanley, Camila, Louie, Katherine B., Bowen, Benjamin P., Northen, Trent R., Currie, Cameron R.
Publicado 2019

Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays)

por Murphy, Katherine M., Edwards, Joseph, Louie, Katherine B., Bowen, Benjamin P., Sundaresan, Venkatesan, Northen, Trent R., Zerbe, Philipp
Publicado 2021

Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes

por Kosina, Suzanne M., Greiner, Annette M., Lau, Rebecca K., Jenkins, Stefan, Baran, Richard, Bowen, Benjamin P., Northen, Trent R.
Publicado 2018

Metabolites Associated with Adaptation of Microorganisms to an Acidophilic, Metal-Rich Environment Identified by Stable-Isotope-Enabled Metabolomics

por Mosier, Annika C., Justice, Nicholas B., Bowen, Benjamin P., Baran, Richard, Thomas, Brian C., Northen, Trent R., Banfield, Jillian F.
Publicado 2013

A robust gene-stacking method utilizing yeast assembly for plant synthetic biology

por Shih, Patrick M., Vuu, Khanh, Mansoori, Nasim, Ayad, Leïla, Louie, Katherine B., Bowen, Benjamin P., Northen, Trent R., Loqué, Dominique
Publicado 2016

Microbial Ecology on Solar Panels in Berkeley, CA, United States

por Porcar, Manuel, Louie, Katherine B., Kosina, Suzanne M., Van Goethem, Marc W., Bowen, Benjamin P., Tanner, Kristie, Northen, Trent R.
Publicado 2018

Differential Intrahepatic Phospholipid Zonation in Simple Steatosis and Nonalcoholic Steatohepatitis

por Wattacheril, Julia, Seeley, Erin H., Angel, Peggi, Chen, Heidi, Bowen, Benjamin P., Lanciault, Christian, M.Caprioli, Richard, Abumrad, Naji, Flynn, Charles Robb
Publicado 2013

Mass spectrometry imaging for in situ kinetic histochemistry

por Louie, Katherine B., Bowen, Benjamin P., McAlhany, Stephanie, Huang, Yurong, Price, John C., Mao, Jian-hua, Hellerstein, Marc, Northen, Trent R.
Publicado 2013

Deciphering microbial interactions in synthetic human gut microbiome communities

por Venturelli, Ophelia S, Carr, Alex C, Fisher, Garth, Hsu, Ryan H, Lau, Rebecca, Bowen, Benjamin P, Hromada, Susan, Northen, Trent, Arkin, Adam P
Publicado 2018

SIMILE enables alignment of tandem mass spectra with statistical significance

por Treen, Daniel G. C., Wang, Mingxun, Xing, Shipei, Louie, Katherine B., Huan, Tao, Dorrestein, Pieter C., Northen, Trent R., Bowen, Benjamin P.
Publicado 2022

Metabolome-Proteome Differentiation Coupled to Microbial Divergence

por Wilmes, Paul, Bowen, Benjamin P., Thomas, Brian C., Mueller, Ryan S., Denef, Vincent J., VerBerkmoes, Nathan C., Hettich, Robert L., Northen, Trent R., Banfield, Jillian F.
Publicado 2010

Substrate Utilization and Competitive Interactions Among Soil Bacteria Vary With Life-History Strategies

por Wang, Ying, Wilhelm, Roland C., Swenson, Tami L., Silver, Anita, Andeer, Peter F., Golini, Amber, Kosina, Suzanne M., Bowen, Benjamin P., Buckley, Daniel H., Northen, Trent R.
Publicado 2022