GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins

por Brůna, Tomáš, Lomsadze, Alexandre, Borodovsky, Mark
Publicado 2020

GeneMark-ETP: Automatic Gene Finding in Eukaryotic Genomes in Consistency with Extrinsic Data

por Bruna, Tomas, Lomsadze, Alexandre, Borodovsky, Mark
Publicado 2023

BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database

por Brůna, Tomáš, Hoff, Katharina J, Lomsadze, Alexandre, Stanke, Mario, Borodovsky, Mark
Publicado 2021

TSEBRA: transcript selector for BRAKER

por Gabriel, Lars, Hoff, Katharina J., Brůna, Tomáš, Borodovsky, Mark, Stanke, Mario
Publicado 2021

BRAKER3: Fully Automated Genome Annotation Using RNA-Seq and Protein Evidence with GeneMark-ETP, AUGUSTUS and TSEBRA

por Gabriel, Lars, Brůna, Tomáš, Hoff, Katharina J., Ebel, Matthis, Lomsadze, Alexandre, Borodovsky, Mark, Stanke, Mario
Publicado 2023

GALBA: Genome Annotation with Miniprot and AUGUSTUS

por Brůna, Tomáš, Li, Heng, Guhlin, Joseph, Honsel, Daniel, Herbold, Steffen, Stanke, Mario, Nenasheva, Natalia, Ebel, Matthis, Gabriel, Lars, Hoff, Katharina J.
Publicado 2023

Galba: genome annotation with miniprot and AUGUSTUS

por Brůna, Tomáš, Li, Heng, Guhlin, Joseph, Honsel, Daniel, Herbold, Steffen, Stanke, Mario, Nenasheva, Natalia, Ebel, Matthis, Gabriel, Lars, Hoff, Katharina J.
Publicado 2023

Disproportionate presence of adenosine in mitochondrial and chloroplast DNA of Chlamydomonas reinhardtii

por El-Sayed, Waleed M.M., Gombolay, Alli L., Xu, Penghao, Yang, Taehwan, Jeon, Youngkyu, Balachander, Sathya, Newnam, Gary, Tao, Sijia, Bowen, Nicole E., Brůna, Tomáš, Borodovsky, Mark, Schinazi, Raymond F., Kim, Baek, Chen, Yongsheng, Storici, Francesca
Publicado 2020

A chromosome-length genome assembly and annotation of blackberry (Rubus argutus, cv. “Hillquist”)

por Brůna, Tomáš, Aryal, Rishi, Dudchenko, Olga, Sargent, Daniel James, Mead, Daniel, Buti, Matteo, Cavallini, Andrea, Hytönen, Timo, Andrés, Javier, Pham, Melanie, Weisz, David, Mascagni, Flavia, Usai, Gabriele, Natali, Lucia, Bassil, Nahla, Fernandez, Gina E, Lomsadze, Alexandre, Armour, Mitchell, Olukolu, Bode, Poorten, Thomas, Britton, Caitlin, Davik, Jahn, Ashrafi, Hamid, Aiden, Erez Lieberman, Borodovsky, Mark, Worthington, Margaret
Publicado 2022