Comparative transcriptomic analysis of Gardnerella vaginalis biofilms vs. planktonic cultures using RNA-seq

por Castro, Joana, França, Angela, Bradwell, Katie R., Serrano, Myrna G., Jefferson, Kimberly K., Cerca, Nuno
Publicado 2017

FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses

por Chung, Matthew, Adkins, Ricky S., Mattick, John S. A., Bradwell, Katie R., Shetty, Amol C., Sadzewicz, Lisa, Tallon, Luke J., Fraser, Claire M., Rasko, David A., Mahurkar, Anup, Dunning Hotopp, Julie C.
Publicado 2021

STRIDE: a command-line HMM-based identifier and sub-classifier of Plasmodium falciparum RIFIN and STEVOR variant surface antigen families

por Zhou, Albert E., Shah, Zalak V., Bradwell, Katie R., Munro, James B., Berry, Andrea A., Serre, David, Takala-Harrison, Shannon, O’Connor, Timothy D., Silva, Joana C., Travassos, Mark A.
Publicado 2022

Genomic comparison of Trypanosoma conorhini and Trypanosoma rangeli to Trypanosoma cruzi strains of high and low virulence

por Bradwell, Katie R, Koparde, Vishal N, Matveyev, Andrey V, Serrano, Myrna G, Alves, João M P, Parikh, Hardik, Huang, Bernice, Lee, Vladimir, Espinosa-Alvarez, Oneida, Ortiz, Paola A, Costa-Martins, André G, Teixeira, Marta M G, Buck, Gregory A
Publicado 2018

Host and Parasite Transcriptomic Changes upon Successive Plasmodium falciparum Infections in Early Childhood

por Bradwell, Katie R., Coulibaly, Drissa, Koné, Abdoulaye K., Laurens, Matthew B., Dembélé, Ahmadou, Tolo, Youssouf, Traoré, Karim, Niangaly, Amadou, Berry, Andrea A., Kouriba, Bourema, Plowe, Christopher V., Doumbo, Ogobara K., Lyke, Kirsten E., Takala-Harrison, Shannon, Thera, Mahamadou A., Travassos, Mark A., Serre, David
Publicado 2020

Children with SARS-CoV-2 in the National COVID Cohort Collaborative (N3C)

por Martin, Blake, DeWitt, Peter E., Russell, Seth, Anand, Adit, Bradwell, Katie R., Bremer, Carolyn, Gabriel, Davera, Girvin, Andrew T., Hajagos, Janos G., McMurry, Julie A., Neumann, Andrew J., Pfaff, Emily R., Walden, Anita, Wooldridge, Jacob T., Yoo, Yun Jae, Saltz, Joel, Gersing, Ken R., Chute, Christopher G., Haendel, Melissa A., Moffitt, Richard, Bennett, Tellen D.
Publicado 2021

Characteristics, Outcomes, and Severity Risk Factors Associated With SARS-CoV-2 Infection Among Children in the US National COVID Cohort Collaborative

por Martin, Blake, DeWitt, Peter E., Russell, Seth, Anand, Adit, Bradwell, Katie R., Bremer, Carolyn, Gabriel, Davera, Girvin, Andrew T., Hajagos, Janos G., McMurry, Julie A., Neumann, Andrew J., Pfaff, Emily R., Walden, Anita, Wooldridge, Jacob T., Yoo, Yun Jae, Saltz, Joel, Gersing, Ken R., Chute, Christopher G., Haendel, Melissa A., Moffitt, Richard, Bennett, Tellen D.
Publicado 2022

Who is pregnant? defining real-world data-based pregnancy episodes in the National COVID Cohort Collaborative (N3C)

por Jones, Sara, Bradwell, Katie R., Chan, Lauren E., Olson-Chen, Courtney, Tarleton, Jessica, Wilkins, Kenneth J., Qin, Qiuyuan, Faherty, Emily Groene, Lau, Yan Kwan, Xie, Catherine, Kao, Yu-Han, Liebman, Michael N., Mariona, Federico, Challa, Anup, Li, Li, Ratcliffe, Sarah J., McMurry, Julie A., Haendel, Melissa A., Patel, Rena C., Hill, Elaine L.
Publicado 2022

NSAID use and clinical outcomes in COVID-19 patients: a 38-center retrospective cohort study

por Reese, Justin T., Coleman, Ben, Chan, Lauren, Blau, Hannah, Callahan, Tiffany J., Cappelletti, Luca, Fontana, Tommaso, Bradwell, Katie R., Harris, Nomi L., Casiraghi, Elena, Valentini, Giorgio, Karlebach, Guy, Deer, Rachel, McMurry, Julie A., Haendel, Melissa A., Chute, Christopher G., Pfaff, Emily, Moffitt, Richard, Spratt, Heidi, Singh, Jasvinder A., Mungall, Christopher J., Williams, Andrew E., Robinson, Peter N.
Publicado 2022

Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset

por Bradwell, Katie R, Wooldridge, Jacob T, Amor, Benjamin, Bennett, Tellen D, Anand, Adit, Bremer, Carolyn, Yoo, Yun Jae, Qian, Zhenglong, Johnson, Steven G, Pfaff, Emily R, Girvin, Andrew T, Manna, Amin, Niehaus, Emily A, Hong, Stephanie S, Zhang, Xiaohan Tanner, Zhu, Richard L, Bissell, Mark, Qureshi, Nabeel, Saltz, Joel, Haendel, Melissa A, Chute, Christopher G, Lehmann, Harold P, Moffitt, Richard A
Publicado 2022

Who is pregnant? Defining real-world data-based pregnancy episodes in the National COVID Cohort Collaborative (N3C)

por Jones, Sara E, Bradwell, Katie R, Chan, Lauren E, McMurry, Julie A, Olson-Chen, Courtney, Tarleton, Jessica, Wilkins, Kenneth J, Ly, Victoria, Ljazouli, Saad, Qin, Qiuyuan, Faherty, Emily Groene, Lau, Yan Kwan, Xie, Catherine, Kao, Yu-Han, Liebman, Michael N, Mariona, Federico, Challa, Anup P, Li, Li, Ratcliffe, Sarah J, Haendel, Melissa A, Patel, Rena C, Hill, Elaine L
Publicado 2023

Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative

por Pfaff, Emily R, Girvin, Andrew T, Gabriel, Davera L, Kostka, Kristin, Morris, Michele, Palchuk, Matvey B, Lehmann, Harold P, Amor, Benjamin, Bissell, Mark, Bradwell, Katie R, Gold, Sigfried, Hong, Stephanie S, Loomba, Johanna, Manna, Amin, McMurry, Julie A, Niehaus, Emily, Qureshi, Nabeel, Walden, Anita, Zhang, Xiaohan Tanner, Zhu, Richard L, Moffitt, Richard A, Haendel, Melissa A, Chute, Christopher G, Adams, William G, Al-Shukri, Shaymaa, Anzalone, Alfred, Baghal, Ahmad, Bennett, Tellen D, Bernstam, Elmer V, Bernstam, Elmer V, Bissell, Mark M, Bush, Brian, Campion, Thomas R, Castro, Victor, Chang, Jack, Chaudhari, Deepa D, Chen, Wenjin, Chu, San, Cimino, James J, Crandall, Keith A, Crooks, Mark, Davies, Sara J Deakyne, DiPalazzo, John, Dorr, David, Eckrich, Dan, Eltinge, Sarah E, Fort, Daniel G, Golovko, George, Gupta, Snehil, Haendel, Melissa A, Hajagos, Janos G, Hanauer, David A, Harnett, Brett M, Horswell, Ronald, Huang, Nancy, Johnson, Steven G, Kahn, Michael, Khanipov, Kamil, Kieler, Curtis, Luzuriaga, Katherine Ruiz De, Maidlow, Sarah, Martinez, Ashley, Mathew, Jomol, McClay, James C, McMahan, Gabriel, Melancon, Brian, Meystre, Stephane, Miele, Lucio, Morizono, Hiroki, Pablo, Ray, Patel, Lav, Phuong, Jimmy, Popham, Daniel J, Pulgarin, Claudia, Santos, Carlos, Sarkar, Indra Neil, Sazo, Nancy, Setoguchi, Soko, Soby, Selvin, Surampalli, Sirisha, Suver, Christine, Vangala, Uma Maheswara Reddy, Visweswaran, Shyam, von Oehsen, James, Walters, Kellie M, Wiley, Laura, Williams, David A, Zai, Adrian
Publicado 2021