qHTSWaterfall: 3-dimensional visualization software for quantitative high-throughput screening (qHTS) data

por Queme, Bryan, Braisted, John C., Dranchak, Patricia, Inglese, James
Publicado 2023

Transcriptomic profiling in canines and humans reveals cancer specific gene modules and biological mechanisms common to both species

por Tawa, Gregory J., Braisted, John, Gerhold, David, Grewal, Gurmit, Mazcko, Christina, Breen, Matthew, Sittampalam, Gurusingham, LeBlanc, Amy K.
Publicado 2021

In vivo versus in vitro protein abundance analysis of Shigella dysenteriae type 1 reveals changes in the expression of proteins involved in virulence, stress and energy metabolism

por Kuntumalla, Srilatha, Zhang, Quanshun, Braisted, John C, Fleischmann, Robert D, Peterson, Scott N, Donohue-Rolfe, Arthur, Tzipori, Saul, Pieper, Rembert
Publicado 2011

Terfenadine resensitizes doxorubicin activity in drug-resistant ovarian cancer cells via an inhibition of CaMKII/CREB1 mediated ABCB1 expression

por Huang, Wei, Yang, Shu, Cheng, Yu-Shan, Sima, Ni, Sun, Wei, Shen, Min, Braisted, John C., Lu, Weiguo, Zheng, Wei
Publicado 2022

Proteomic View of Interactions of Shiga Toxin-Producing Escherichia coli with the Intestinal Environment in Gnotobiotic Piglets

por Pieper, Rembert, Zhang, Quanshun, Clark, David J., Parmar, Prashanth P., Alami, Hamid, Suh, Moo-Jin, Kuntumalla, Srilatha, Braisted, John C., Huang, Shih-Ting, Tzipori, Saul
Publicado 2013

Transcriptional profiling of canine osteosarcoma identifies prognostic gene expression signatures with translational value for humans

por Mannheimer, Joshua D., Tawa, Gregory, Gerhold, David, Braisted, John, Sayers, Carly M., McEachron, Troy A., Meltzer, Paul, Mazcko, Christina, Beck, Jessica A., LeBlanc, Amy K.
Publicado 2023

Characterizing the Escherichia coli O157:H7 Proteome Including Protein Associations with Higher Order Assemblies

por Pieper, Rembert, Zhang, Quanshun, Clark, David J., Huang, Shih-Ting, Suh, Moo-Jin, Braisted, John C., Payne, Samuel H., Fleischmann, Robert D., Peterson, Scott N., Tzipori, Saul
Publicado 2011

The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results

por Braisted, John C, Kuntumalla, Srilatha, Vogel, Christine, Marcotte, Edward M, Rodrigues, Alan R, Wang, Rong, Huang, Shih-Ting, Ferlanti, Erik S, Saeed, Alexander I, Fleischmann, Robert D, Peterson, Scott N, Pieper, Rembert
Publicado 2008

Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome

por Kuntumalla, Srilatha, Braisted, John C, Huang, Shih-Ting, Parmar, Prashanth P, Clark, David J, Alami, Hamid, Zhang, Quanshun, Donohue-Rolfe, Arthur, Tzipori, Saul, Fleischmann, Robert D, Peterson, Scott N, Pieper, Rembert
Publicado 2009

Quantitative high-throughput screening assays for the discovery and development of SIRPα-CD47 interaction inhibitors

por Miller, Thomas W., Amason, Joshua D., Garcin, Elsa D., Lamy, Laurence, Dranchak, Patricia K., Macarthur, Ryan, Braisted, John, Rubin, Jeffrey S., Burgess, Teresa L., Farrell, Catherine L., Roberts, David D., Inglese, James
Publicado 2019

A chemical–biological similarity-based grouping of complex substances as a prototype approach for evaluating chemical alternatives

por Grimm, Fabian A., Iwata, Yasuhiro, Sirenko, Oksana, Chappell, Grace A., Wright, Fred A., Reif, David M., Braisted, John, Gerhold, David L., Yeakley, Joanne M., Shepard, Peter, Seligmann, Bruce, Roy, Tim, Boogaard, Peter J., Ketelslegers, Hans B., Rohde, Arlean M., Rusyn, Ivan
Publicado 2016

Robotic High-Throughput Biomanufacturing and Functional Differentiation of Human Pluripotent Stem Cells

por Tristan, Carlos A., Ormanoglu, Pinar, Slamecka, Jaroslav, Malley, Claire, Chu, Pei-Hsuan, Jovanovic, Vukasin M., Gedik, Yeliz, Bonney, Charles, Barnaeva, Elena, Braisted, John, Mallanna, Sunil K., Dorjsuren, Dorjbal, Iannotti, Michael J., Voss, Ty C., Michael, Sam, Simeonov, Anton, Singeç, Ilyas
Publicado 2020

The value of prospective metabolomic susceptibility endotypes: broad applicability for infectious diseases

por Chen, Yulu, Mendez, Kevin, Begum, Sofina, Dean, Emily, Chatelaine, Haley, Braisted, John, Fangal, Vrushali D., Cote, Margaret, Huang, Mengna, Chu, Su H., Stav, Meryl, Chen, Qingwen, Prince, Nicole, Kelly, Rachel, Christopher, Kenneth B., Diray-Arce, Joann, Mathé, Ewy A., Lasky-Su, Jessica
Publicado 2023

Robotic high-throughput biomanufacturing and functional differentiation of human pluripotent stem cells

por Tristan, Carlos A., Ormanoglu, Pinar, Slamecka, Jaroslav, Malley, Claire, Chu, Pei-Hsuan, Jovanovic, Vukasin M., Gedik, Yeliz, Jethmalani, Yogita, Bonney, Charles, Barnaeva, Elena, Braisted, John, Mallanna, Sunil K., Dorjsuren, Dorjbal, Iannotti, Michael J., Voss, Ty C., Michael, Sam, Simeonov, Anton, Singeç, Ilyas
Publicado 2021

SENP1-mediated deSUMOylation of JAK2 regulates its kinase activity and platinum drug resistance

por Li, Jing, Wu, Ruiqin, Yung, Mingo M. H., Sun, Jing, Li, Zhuqing, Yang, Hai, Zhang, Yi, Liu, Stephanie S., Cheung, Annie N. Y., Ngan, Hextan Y. S., Braisted, John C., Zheng, Wei, Wei, Huiqiang, Gao, Yingtang, Nemes, Peter, Pei, Huadong, Chan, David W., Li, Yiliang, Zhu, Wenge
Publicado 2021