Sequencing SARS-CoV-2 Genomes from Saliva

por Alpert, Tara, Vogels, Chantal B.F., Breban, Mallery I., Petrone, Mary E., Wyllie, Anne L., Grubaugh, Nathan D., Fauver, Joseph R.
Publicado 2021

Sequencing SARS-CoV-2 genomes from saliva

por Alpert, Tara, Vogels, Chantal B F, Breban, Mallery I, Petrone, Mary E, Wyllie, Anne L, Grubaugh, Nathan D, Fauver, Joseph R
Publicado 2022

Method versatility in RNA extraction-free PCR detection of SARS-CoV-2 in saliva samples

por Allicock, Orchid M., Yolda-Carr, Devyn, Earnest, Rebecca, Breban, Mallery I., Vega, Noel, Ott, Isabel M., Kalinich, Chaney, Alpert, Tara, Wyllie, Anne L.
Publicado 2023

Genome Sequence of a Recombinant SARS-CoV-2 Lineage XAM (BA.1.1/BA.2.9) Strain from a Clinical Sample in Santo Domingo, Dominican Republic

por Paulino-Ramírez, Robert, Pham, Kien, Breban, Mallery I., Peguero, Armando, Jabier, Maridania, Sánchez, Nelissa, Eustate, Iscania, Ruiz, Ingrid, Grubaugh, Nathan D., Hahn, Anne M.
Publicado 2022

362. Saliva as a Reliable Sample Type for Mass SARS-CoV-2 Testing Strategies

por Wyllie, Anne, Vogels, Chantal B, Allicock, Orchid M, Watkins, Anne, Petrone, Mary, Yolda-Carr, Devyn, Harden, Christina, Brackney, Doug, Kalinich, Chaney C, Breban, Mallery I, Ott, Isabel M, Sikka, Robby, Kadiri, Lolahon, Grubaugh, Nathan D
Publicado 2021

Insights into the limited global spread of the immune evasive SARS-CoV-2 variant Mu

por Petrone, Mary E., Lucas, Carolina, Menasche, Bridget, Breban, Mallery I., Yildirim, Inci, Campbell, Melissa, Omer, Saad B., Ko, Albert I., Grubaugh, Nathan D., Iwasak, Akiko, Wilen, Craig B., Vogels, Chantal B.F., Fauver, Joseph R.
Publicado 2022

A stem-loop RNA RIG-I agonist confers prophylactic and therapeutic protection against acute and chronic SARS-CoV-2 infection in mice

por Mao, Tianyang, Israelow, Benjamin, Lucas, Carolina, Vogels, Chantal B. F., Fedorova, Olga, Breban, Mallery I., Menasche, Bridget L., Dong, Huiping, Linehan, Melissa, Wilen, Craig B., Landry, Marie L., Grubaugh, Nathan D., Pyle, Anna M., Iwasaki, Akiko
Publicado 2021

Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection

por Chaguza, Chrispin, Hahn, Anne M., Petrone, Mary E., Zhou, Shuntai, Ferguson, David, Breban, Mallery I., Pham, Kien, Peña-Hernández, Mario A., Castaldi, Christopher, Hill, Verity, Schulz, Wade, Swanstrom, Ronald I., Roberts, Scott C., Grubaugh, Nathan D.
Publicado 2022

Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection

por Chaguza, Chrispin, Hahn, Anne M., Petrone, Mary E., Zhou, Shuntai, Ferguson, David, Breban, Mallery I., Pham, Kien, Peña-Hernández, Mario A., Castaldi, Christopher, Hill, Verity, Schulz, Wade, Swanstrom, Ronald I., Roberts, Scott C., Grubaugh, Nathan D.
Publicado 2023

The community‐wide effectiveness of municipal larval control programs for West Nile virus risk reduction in Co nnecticut, USA

por McMillan, Joseph R, Harden, Christina A, Burtis, James C, Breban, Mallery I, Shepard, John J, Petruff, Tanya A, Misencik, Michael J, Bransfield, Angela B, Poggi, Joseph D, Harrington, Laura C, Andreadis, Theodore G, Armstrong, Philip M
Publicado 2021

Nonsystematic Reporting Biases of the SARS-CoV-2 Variant Mu Could Impact Our Understanding of the Epidemiological Dynamics of Emerging Variants

por Petrone, Mary E, Lucas, Carolina, Menasche, Bridget, Breban, Mallery I, Yildirim, Inci, Campbell, Melissa, Omer, Saad B, Holmes, Edward C, Ko, Albert I, Grubaugh, Nathan D, Iwasaki, Akiko, Wilen, Craig B, Vogels, Chantal B F, Fauver, Joseph R
Publicado 2023

A stem-loop RNA RIG-I agonist protects against acute and chronic SARS-CoV-2 infection in mice

por Mao, Tianyang, Israelow, Benjamin, Lucas, Carolina, Vogels, Chantal B.F., Gomez-Calvo, Maria Luisa, Fedorova, Olga, Breban, Mallery I., Menasche, Bridget L., Dong, Huiping, Linehan, Melissa, Wilen, Craig B., Landry, Marie L., Grubaugh, Nathan D., Pyle, Anna M., Iwasaki, Akiko
Publicado 2021

Viral Dynamics of SARS-CoV-2 Variants in Vaccinated and Unvaccinated Persons

por Kissler, Stephen M., Fauver, Joseph R., Mack, Christina, Tai, Caroline G., Breban, Mallery I., Watkins, Anne E., Samant, Radhika M., Anderson, Deverick J., Metti, Jessica, Khullar, Gaurav, Baits, Rachel, MacKay, Matthew, Salgado, Daisy, Baker, Tim, Dudley, Joel T., Mason, Christopher E., Ho, David D., Grubaugh, Nathan D., Grad, Yonatan H.
Publicado 2021

Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

por Baaijens, Jasmijn A., Zulli, Alessandro, Ott, Isabel M., Petrone, Mary E., Alpert, Tara, Fauver, Joseph R., Kalinich, Chaney C., Vogels, Chantal B.F., Breban, Mallery I., Duvallet, Claire, McElroy, Kyle, Ghaeli, Newsha, Imakaev, Maxim, Mckenzie-Bennett, Malaika, Robison, Keith, Plocik, Alex, Schilling, Rebecca, Pierson, Martha, Littlefield, Rebecca, Spencer, Michelle, Simen, Birgitte B., Hanage, William P., Grubaugh, Nathan D., Peccia, Jordan, Baym, Michael
Publicado 2021

Survey of white-footed mice in Connecticut, USA reveals low SARS-CoV-2 seroprevalence and infection with divergent betacoronaviruses

por Earnest, Rebecca, Hahn, Anne M., Feriancek, Nicole M., Brandt, Matthew, Filler, Renata B., Zhao, Zhe, Breban, Mallery I., Vogels, Chantal B.F., Chen, Nicholas F.G., Koch, Robert T., Porzucek, Abbey J., Sodeinde, Afeez, Garbiel, Alexa, Keanna, Claire, Litwak, Hannah, Stuber, Heidi R., Cantoni, Jamie L., Pitzer, Virginia E., Olarte Castillo, Ximena A., Goodman, Laura B., Wilen, Craig B., Linske, Megan A., Williams, Scott C., Grubaugh, Nathan D.
Publicado 2023

Neutralizing antibodies against the SARS-CoV-2 Delta and Omicron variants following heterologous CoronaVac plus BNT162b2 booster vaccination

por Pérez-Then, Eddy, Lucas, Carolina, Monteiro, Valter Silva, Miric, Marija, Brache, Vivian, Cochon, Leila, Vogels, Chantal B. F., Malik, Amyn A., De la Cruz, Elena, Jorge, Aidelis, De los Santos, Margarita, Leon, Patricia, Breban, Mallery I., Billig, Kendall, Yildirim, Inci, Pearson, Claire, Downing, Randy, Gagnon, Emily, Muyombwe, Anthony, Razeq, Jafar, Campbell, Melissa, Ko, Albert I., Omer, Saad B., Grubaugh, Nathan D., Vermund, Sten H., Iwasaki, Akiko
Publicado 2022

DengueSeq: A pan-serotype whole genome amplicon sequencing protocol for dengue virus

por Vogels, Chantal B.F., Hill, Verity, Breban, Mallery I., Chaguza, Chrispin, Paul, Lauren M., Sodeinde, Afeez, Taylor-Salmon, Emma, Ott, Isabel M., Petrone, Mary E., Dijk, Dennis, Jonges, Marcel, Welkers, Matthijs R.A., Locksmith, Timothy, Dong, Yibo, Tarigopula, Namratha, Tekin, Omer, Schmedes, Sarah, Bunch, Sylvia, Cano, Natalia, Jaber, Rayah, Panzera, Charles, Stryker, Ian, Vergara, Julieta, Zimler, Rebecca, Kopp, Edgar, Heberlein, Lea, Morrison, Andrea M., Michael, Scott F., Grubaugh, Nathan D.
Publicado 2023

Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons

por Chaguza, Chrispin, Coppi, Andreas, Earnest, Rebecca, Ferguson, David, Kerantzas, Nicholas, Warner, Frederick, Young, H. Patrick, Breban, Mallery I., Billig, Kendall, Koch, Robert Tobias, Pham, Kien, Kalinich, Chaney C., Ott, Isabel M., Fauver, Joseph R., Hahn, Anne M., Tikhonova, Irina R., Castaldi, Christopher, De Kumar, Bony, Pettker, Christian M., Warren, Joshua L., Weinberger, Daniel M., Landry, Marie L., Peaper, David R., Schulz, Wade, Vogels, Chantal B.F., Grubaugh, Nathan D.
Publicado 2022

Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques

por Baaijens, Jasmijn A., Zulli, Alessandro, Ott, Isabel M., Nika, Ioanna, van der Lugt, Mart J., Petrone, Mary E., Alpert, Tara, Fauver, Joseph R., Kalinich, Chaney C., Vogels, Chantal B. F., Breban, Mallery I., Duvallet, Claire, McElroy, Kyle A., Ghaeli, Newsha, Imakaev, Maxim, Mckenzie-Bennett, Malaika F., Robison, Keith, Plocik, Alex, Schilling, Rebecca, Pierson, Martha, Littlefield, Rebecca, Spencer, Michelle L., Simen, Birgitte B., Hanage, William P., Grubaugh, Nathan D., Peccia, Jordan, Baym, Michael
Publicado 2022

PCR assay to enhance global surveillance for SARS-CoV-2 variants of concern

por Vogels, Chantal B.F., Breban, Mallery I., Alpert, Tara, Petrone, Mary E., Watkins, Anne E., Ott, Isabel M., de Jesus, Jaqueline Goes, Claro, Ingra Morales, Ferreira, Giulia Magalhães, Crispim, Myuki A.E., Singh, Lavanya, Tegally, Houriiyah, Anyaneji, Ugochukwu J., Hodcroft, Emma B., Mason, Christopher E., Khullar, Gaurav, Metti, Jessica, Dudley, Joel T., MacKay, Matthew J., Nash, Megan, Wang, Jianhui, Liu, Chen, Hui, Pei, Murphy, Steven, Neal, Caleb, Laszlo, Eva, Landry, Marie L., Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, de Oliveira, Tulio, Faria, Nuno R., Sabino, Ester C., Neher, Richard A., Fauver, Joseph R., Grubaugh, Nathan D.
Publicado 2021