Phylotranscriptomics: Saturated Third Codon Positions Radically Influence the Estimation of Trees Based on Next-Gen Data

por Breinholt, Jesse W., Kawahara, Akito Y.
Publicado 2013

Testing Phylogenetic Hypotheses of the Subgenera of the Freshwater Crayfish Genus Cambarus (Decapoda: Cambaridae)

por Breinholt, Jesse W., Porter, Megan L., Crandall, Keith A.
Publicado 2012

Evidence for common horizontal transmission of Wolbachia among butterflies and moths

por Ahmed, Muhammad Z., Breinholt, Jesse W., Kawahara, Akito Y.
Publicado 2016

Phylogeny and Evolutionary Patterns in the Dwarf Crayfish Subfamily (Decapoda: Cambarellinae)

por Pedraza-Lara, Carlos, Doadrio, Ignacio, Breinholt, Jesse W., Crandall, Keith A.
Publicado 2012

An Earthworm Riddle: Systematics and Phylogeography of the Spanish Lumbricid Postandrilus

por Pérez-Losada, Marcos, Breinholt, Jesse W., Porto, Pablo G., Aira, Manuel, Domínguez, Jorge
Publicado 2011

Anchored phylogenomics illuminates the skipper butterfly tree of life

por Toussaint, Emmanuel F. A., Breinholt, Jesse W., Earl, Chandra, Warren, Andrew D., Brower, Andrew V. Z., Yago, Masaya, Dexter, Kelly M., Espeland, Marianne, Pierce, Naomi E., Lohman, David J., Kawahara, Akito Y.
Publicado 2018

Anti-bat ultrasound production in moths is globally and phylogenetically widespread

por Barber, Jesse R., Plotkin, David, Rubin, Juliette J., Homziak, Nicholas T., Leavell, Brian C., Houlihan, Peter R., Miner, Krystie A., Breinholt, Jesse W., Quirk-Royal, Brandt, Padrón, Pablo Sebastián, Nunez, Matias, Kawahara, Akito Y.
Publicado 2022

Genomic selection reveals hidden relatedness and increased breeding efficiency in western redcedar polycross breeding

por Gamal El‐Dien, Omnia, Shalev, Tal J., Yuen, Macaire M. S., Stirling, Rod, Daniels, Lori D., Breinholt, Jesse W., Neves, Leandro G., Kirst, Matias, Van der Merwe, Lise, Yanchuk, Alvin D., Ritland, Carol, Russell, John H., Bohlmann, Joerg
Publicado 2022

Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths

por Kawahara, Akito Y., Plotkin, David, Espeland, Marianne, Meusemann, Karen, Toussaint, Emmanuel F. A., Donath, Alexander, Gimnich, France, Frandsen, Paul B., Zwick, Andreas, dos Reis, Mario, Barber, Jesse R., Peters, Ralph S., Liu, Shanlin, Zhou, Xin, Mayer, Christoph, Podsiadlowski, Lars, Storer, Caroline, Yack, Jayne E., Misof, Bernhard, Breinholt, Jesse W.
Publicado 2019

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms

por Speiser, Daniel I, Pankey, M Sabrina, Zaharoff, Alexander K, Battelle, Barbara A, Bracken-Grissom, Heather D, Breinholt, Jesse W, Bybee, Seth M, Cronin, Thomas W, Garm, Anders, Lindgren, Annie R, Patel, Nipam H, Porter, Megan L, Protas, Meredith E, Rivera, Ajna S, Serb, Jeanne M, Zigler, Kirk S, Crandall, Keith A, Oakley, Todd H
Publicado 2014

A target enrichment probe set for resolving the flagellate land plant tree of life

por Breinholt, Jesse W., Carey, Sarah B., Tiley, George P., Davis, E. Christine, Endara, Lorena, McDaniel, Stuart F., Neves, Leandro G., Sessa, Emily B., von Konrat, Matt, Chantanaorrapint, Sahut, Fawcett, Susan, Ickert‐Bond, Stefanie M., Labiak, Paulo H., Larraín, Juan, Lehnert, Marcus, Lewis, Lily R., Nagalingum, Nathalie S., Patel, Nikisha, Rensing, Stefan A., Testo, Weston, Vasco, Alejandra, Villarreal, Juan Carlos, Williams, Evelyn Webb, Burleigh, J. Gordon
Publicado 2021

The western redcedar genome reveals low genetic diversity in a self-compatible conifer

por Shalev, Tal J., Gamal El-Dien, Omnia, Yuen, Macaire M.S., Shengqiang, Shu, Jackman, Shaun D., Warren, René L., Coombe, Lauren, van der Merwe, Lise, Stewart, Ada, Boston, Lori B., Plott, Christopher, Jenkins, Jerry, He, Guifen, Yan, Juying, Yan, Mi, Guo, Jie, Breinholt, Jesse W., Neves, Leandro G., Grimwood, Jane, Rieseberg, Loren H., Schmutz, Jeremy, Birol, Inanc, Kirst, Matias, Yanchuk, Alvin D., Ritland, Carol, Russell, John H., Bohlmann, Joerg
Publicado 2022

The Development of an Infrastructure to Facilitate the Use of Whole Genome Sequencing for Population Health

por Walton, Nephi A., Hafen, Brent, Graceffo, Sara, Sutherland, Nykole, Emmerson, Melanie, Palmquist, Rachel, Formea, Christine M., Purcell, Maricel, Heale, Bret, Brown, Matthew A., Danford, Christopher J., Rachamadugu, Sumathi I., Person, Thomas N., Shortt, Katherine A., Christensen, G. Bryce, Evans, Jared M., Raghunath, Sharanya, Johnson, Christopher P., Knight, Stacey, Le, Viet T., Anderson, Jeffrey L., Van Meter, Margaret, Reading, Teresa, Haslem, Derrick S., Hansen, Ivy C., Batcher, Betsey, Barker, Tyler, Sheffield, Travis J., Yandava, Bhaskara, Taylor, David P., Ranade-Kharkar, Pallavi, Giauque, Christopher C., Eyring, Kenneth R., Breinholt, Jesse W., Miller, Mickey R., Carter, Payton R., Gillman, Jason L., Gunn, Andrew W., Knowlton, Kirk U., Bonkowsky, Joshua L., Stefansson, Kari, Nadauld, Lincoln D., McLeod, Howard L.
Publicado 2022

A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins

por Kawahara, Akito Y., Storer, Caroline, Carvalho, Ana Paula S., Plotkin, David M., Condamine, Fabien L., Braga, Mariana P., Ellis, Emily A., St Laurent, Ryan A., Li, Xuankun, Barve, Vijay, Cai, Liming, Earl, Chandra, Frandsen, Paul B., Owens, Hannah L., Valencia-Montoya, Wendy A., Aduse-Poku, Kwaku, Toussaint, Emmanuel F. A., Dexter, Kelly M., Doleck, Tenzing, Markee, Amanda, Messcher, Rebeccah, Nguyen, Y-Lan, Badon, Jade Aster T., Benítez, Hugo A., Braby, Michael F., Buenavente, Perry A. C., Chan, Wei-Ping, Collins, Steve C., Rabideau Childers, Richard A., Dankowicz, Even, Eastwood, Rod, Fric, Zdenek F., Gott, Riley J., Hall, Jason P. W., Hallwachs, Winnie, Hardy, Nate B., Sipe, Rachel L. Hawkins, Heath, Alan, Hinolan, Jomar D., Homziak, Nicholas T., Hsu, Yu-Feng, Inayoshi, Yutaka, Itliong, Micael G. A., Janzen, Daniel H., Kitching, Ian J., Kunte, Krushnamegh, Lamas, Gerardo, Landis, Michael J., Larsen, Elise A., Larsen, Torben B., Leong, Jing V., Lukhtanov, Vladimir, Maier, Crystal A., Martinez, Jose I., Martins, Dino J., Maruyama, Kiyoshi, Maunsell, Sarah C., Mega, Nicolás Oliveira, Monastyrskii, Alexander, Morais, Ana B. B., Müller, Chris J., Naive, Mark Arcebal K., Nielsen, Gregory, Padrón, Pablo Sebastián, Peggie, Djunijanti, Romanowski, Helena Piccoli, Sáfián, Szabolcs, Saito, Motoki, Schröder, Stefan, Shirey, Vaughn, Soltis, Doug, Soltis, Pamela, Sourakov, Andrei, Talavera, Gerard, Vila, Roger, Vlasanek, Petr, Wang, Houshuai, Warren, Andrew D., Willmott, Keith R., Yago, Masaya, Jetz, Walter, Jarzyna, Marta A., Breinholt, Jesse W., Espeland, Marianne, Ries, Leslie, Guralnick, Robert P., Pierce, Naomi E., Lohman, David J.
Publicado 2023