Probabilistic approaches to alignment with tandem repeats

por Nánási, Michal, Vinař, Tomáš, Brejová, Broňa
Publicado 2014

GAML: genome assembly by maximum likelihood

por Boža, Vladimír, Brejová, Broňa, Vinař, Tomáš
Publicado 2015

DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads

por Boža, Vladimír, Brejová, Broňa, Vinař, Tomáš
Publicado 2017

Markov chains improve the significance computation of overlapping genome annotations

por Gafurov, Askar, Brejová, Broňa, Medvedev, Paul
Publicado 2022

SWSPM: A Novel Alignment-Free DNA Comparison Method Based on Signal Processing Approaches

por Farkaš, Tomáš, Sitarčík, Jozef, Brejová, Broňa, Lucká, Mária
Publicado 2019

Nanopore base calling on the edge

por Perešíni, Peter, Boža, Vladimír, Brejová, Broňa, Vinař, Tomáš
Publicado 2021

PlasBin-flow: a flow-based MILP algorithm for plasmid contigs binning

por Mane, Aniket, Faizrahnemoon, Mahsa, Vinař, Tomáš, Brejová, Broňa, Chauve, Cedric
Publicado 2023

plASgraph2: using graph neural networks to detect plasmid contigs from an assembly graph

por Sielemann, Janik, Sielemann, Katharina, Brejová, Broňa, Vinař, Tomáš, Chauve, Cedric
Publicado 2023

Isometric gene tree reconciliation revisited

por Brejová, Broňa, Gafurov, Askar, Pardubská, Dana, Sabo, Michal, Vinař, Tomáš
Publicado 2017

RNA motif search with data-driven element ordering

por Rampášek, Ladislav, Jimenez, Randi M., Lupták, Andrej, Vinař, Tomáš, Brejová, Broňa
Publicado 2016

WarpSTR: determining tandem repeat lengths using raw nanopore signals

por Sitarčík, Jozef, Vinař, Tomáš, Brejová, Broňa, Krampl, Werner, Budiš, Jaroslav, Radvánszky, Ján, Lucká, Mária
Publicado 2023

Genome Sequence of an Arthroconidial Yeast, Saprochaete fungicola CBS 625.85

por Brejová, Broňa, Lichancová, Hana, Hodorová, Viktória, Neboháčová, Martina, Tomáška, Ľubomír, Vinař, Tomáš, Nosek, Jozef
Publicado 2019

A Possible Role for Short Introns in the Acquisition of Stroma-Targeting Peptides in the Flagellate Euglena gracilis

por Vesteg, Matej, Vacula, Rostislav, Steiner, Jürgen M., Mateášiková, Bianka, Löffelhardt, Wolfgang, Brejová, Broňa, Krajčovič, Juraj
Publicado 2010

Draft Genome Sequence of an Obligate Psychrophilic Yeast, Candida psychrophila NRRL Y-17665(T)

por Brejová, Broňa, Lichancová, Hana, Brázdovič, Filip, Cillingová, Andrea, Neboháčová, Martina, Tomáška, Ľubomír, Vinař, Tomáš, Nosek, Jozef
Publicado 2017

Chromosome-Level Genome Assembly of the Yeast Candida verbasci

por Brejová, Broňa, Hodorová, Viktória, Lichancová, Hana, Peričková, Eunika, Šoucová, Veronika Anna, Sipiczki, Matthias, Vinař, Tomáš, Nosek, Jozef
Publicado 2023

Finding genes in Schistosoma japonicum: annotating novel genomes with help of extrinsic evidence

por Brejová, Broňa, Vinař, Tomáš, Chen, Yangyi, Wang, Shengyue, Zhao, Guoping, Brown, Daniel G., Li, Ming, Zhou, Yan
Publicado 2009

VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples

por Gafurov, Askar, Baláž, Andrej, Amman, Fabian, Boršová, Kristína, Čabanová, Viktória, Klempa, Boris, Bergthaler, Andreas, Vinař, Tomáš, Brejová, Broňa
Publicado 2022

Nanopore sequencing of SARS-CoV-2: Comparison of short and long PCR-tiling amplicon protocols

por Brejová, Broňa, Boršová, Kristína, Hodorová, Viktória, Čabanová, Viktória, Gafurov, Askar, Fričová, Dominika, Neboháčová, Martina, Vinař, Tomáš, Klempa, Boris, Nosek, Jozef
Publicado 2021

A SARS-CoV-2 mutant from B.1.258 lineage with ∆H69/∆V70 deletion in the Spike protein circulating in Central Europe in the fall 2020

por Brejová, Broňa, Boršová, Kristína, Hodorová, Viktória, Čabanová, Viktória, Reizigová, Lenka, Paul, Evan D., Čekan, Pavol, Klempa, Boris, Nosek, Jozef, Vinař, Tomáš
Publicado 2021

Evolution of linear chromosomes and multipartite genomes in yeast mitochondria

por Valach, Matus, Farkas, Zoltan, Fricova, Dominika, Kovac, Jakub, Brejova, Brona, Vinar, Tomas, Pfeiffer, Ilona, Kucsera, Judit, Tomaska, Lubomir, Lang, B. Franz, Nosek, Jozef
Publicado 2011