Fine-tuning structural RNA alignments in the twilight zone

por Bremges, Andreas, Schirmer, Stefanie, Giegerich, Robert
Publicado 2010

Critical Assessment of Metagenome Interpretation Enters the Second Round

por Bremges, Andreas, McHardy, Alice C.
Publicado 2018

MeCorS: Metagenome-enabled error correction of single cell sequencing reads

por Bremges, Andreas, Singer, Esther, Woyke, Tanja, Sczyrba, Alexander
Publicado 2016

CAMITAX: Taxon labels for microbial genomes

por Bremges, Andreas, Fritz, Adrian, McHardy, Alice C
Publicado 2020

Investigation of different nitrogen reduction routes and their key microbial players in wood chip-driven denitrification beds

por Grießmeier, Victoria, Bremges, Andreas, McHardy, Alice C., Gescher, Johannes
Publicado 2017

A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis

por Gillett, Alan, Bergman, Petra, Parsa, Roham, Bremges, Andreas, Giegerich, Robert, Jagodic, Maja
Publicado 2013

Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants

por Stolze, Yvonne, Bremges, Andreas, Maus, Irena, Pühler, Alfred, Sczyrba, Alexander, Schlüter, Andreas
Publicado 2017

Characterisation of a stable laboratory co-culture of acidophilic nanoorganisms

por Krause, Susanne, Bremges, Andreas, Münch, Philipp C., McHardy, Alice C., Gescher, Johannes
Publicado 2017

Assessing taxonomic metagenome profilers with OPAL

por Meyer, Fernando, Bremges, Andreas, Belmann, Peter, Janssen, Stefan, McHardy, Alice C., Koslicki, David
Publicado 2019

Bioboxes: standardised containers for interchangeable bioinformatics software

por Belmann, Peter, Dröge, Johannes, Bremges, Andreas, McHardy, Alice C., Sczyrba, Alexander, Barton, Michael D.
Publicado 2015

From Genomes to Phenotypes: Traitar, the Microbial Trait Analyzer

por Weimann, Aaron, Mooren, Kyra, Frank, Jeremy, Pope, Phillip B., Bremges, Andreas, McHardy, Alice C.
Publicado 2016

Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants

por Stolze, Yvonne, Bremges, Andreas, Rumming, Madis, Henke, Christian, Maus, Irena, Pühler, Alfred, Sczyrba, Alexander, Schlüter, Andreas
Publicado 2016

Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant

por Bremges, Andreas, Maus, Irena, Belmann, Peter, Eikmeyer, Felix, Winkler, Anika, Albersmeier, Andreas, Pühler, Alfred, Schlüter, Andreas, Sczyrba, Alexander
Publicado 2015

Haploflow: strain-resolved de novo assembly of viral genomes

por Fritz, Adrian, Bremges, Andreas, Deng, Zhi-Luo, Lesker, Till Robin, Götting, Jasper, Ganzenmueller, Tina, Sczyrba, Alexander, Dilthey, Alexander, Klawonn, Frank, McHardy, Alice Carolyn
Publicado 2021

CAMISIM: simulating metagenomes and microbial communities

por Fritz, Adrian, Hofmann, Peter, Majda, Stephan, Dahms, Eik, Dröge, Johannes, Fiedler, Jessika, Lesker, Till R., Belmann, Peter, DeMaere, Matthew Z., Darling, Aaron E., Sczyrba, Alexander, Bremges, Andreas, McHardy, Alice C.
Publicado 2019

Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning‐enabled molecular diagnostics

por Khaledi, Ariane, Weimann, Aaron, Schniederjans, Monika, Asgari, Ehsaneddin, Kuo, Tzu‐Hao, Oliver, Antonio, Cabot, Gabriel, Kola, Axel, Gastmeier, Petra, Hogardt, Michael, Jonas, Daniel, Mofrad, Mohammad RK, Bremges, Andreas, McHardy, Alice C, Häussler, Susanne
Publicado 2020

Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates

por Maus, Irena, Koeck, Daniela E., Cibis, Katharina G., Hahnke, Sarah, Kim, Yong S., Langer, Thomas, Kreubel, Jana, Erhard, Marcel, Bremges, Andreas, Off, Sandra, Stolze, Yvonne, Jaenicke, Sebastian, Goesmann, Alexander, Sczyrba, Alexander, Scherer, Paul, König, Helmut, Schwarz, Wolfgang H., Zverlov, Vladimir V., Liebl, Wolfgang, Pühler, Alfred, Schlüter, Andreas, Klocke, Michael
Publicado 2016

Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes

por Maus, Irena, Bremges, Andreas, Stolze, Yvonne, Hahnke, Sarah, Cibis, Katharina G., Koeck, Daniela E., Kim, Yong S., Kreubel, Jana, Hassa, Julia, Wibberg, Daniel, Weimann, Aaron, Off, Sandra, Stantscheff, Robbin, Zverlov, Vladimir V., Schwarz, Wolfgang H., König, Helmut, Liebl, Wolfgang, Scherer, Paul, McHardy, Alice C., Sczyrba, Alexander, Klocke, Michael, Pühler, Alfred, Schlüter, Andreas
Publicado 2017

Critical Assessment of Metagenome Interpretation: the second round of challenges

por Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Antipov, Dmitry, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J., Brown, C. Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Clausen, Philip T. L. C., Cristian, Alexandru, Dabrowski, Piotr Wojciech, Darling, Aaron E., Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A., Hansen, Lars Hestbjerg, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Jørgensen, Tue Sparholt, Kieser, Silas D., Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Korobeynikov, Anton, Kwan, Jason, LaPierre, Nathan, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marcelino, Vanessa R., Marchet, Camille, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R., Milanese, Alessio, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas, Peterlongo, Pierre, Piro, Vitor C., Porter, Jacob S., Rasmussen, Simon, Rees, Evan R., Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L., Ruscheweyh, Hans-Joachim, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn
Publicado 2022