Gates of Enzymes

por Gora, Artur, Brezovsky, Jan, Damborsky, Jiri
Publicado 2013

Dynamics, a Powerful Component of Current and Future in Silico Approaches for Protein Design and Engineering

por Surpeta, Bartłomiej, Sequeiros-Borja, Carlos Eduardo, Brezovsky, Jan
Publicado 2020

Recent advances in user-friendly computational tools to engineer protein function

por Sequeiros-Borja, Carlos Eduardo, Surpeta, Bartłomiej, Brezovsky, Jan
Publicado 2020

Divide-and-conquer approach to study protein tunnels in long molecular dynamics simulations

por Sequeiros-Borja, Carlos, Surpeta, Bartlomiej, Marchlewski, Igor, Brezovsky, Jan
Publicado 2022

PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions

por Bendl, Jaroslav, Musil, Miloš, Štourač, Jan, Zendulka, Jaroslav, Damborský, Jiří, Brezovský, Jan
Publicado 2016

HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering

por Bendl, Jaroslav, Stourac, Jan, Sebestova, Eva, Vavra, Ondrej, Musil, Milos, Brezovsky, Jan, Damborsky, Jiri
Publicado 2016

Fructose 1-phosphate is the one and only physiological effector of the Cra (FruR) regulator of Pseudomonas putida

por Chavarría, Max, Durante-Rodríguez, Gonzalo, Krell, Tino, Santiago, César, Brezovsky, Jan, Damborsky, Jiri, de Lorenzo, Víctor
Publicado 2014

Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport

por Stourac, Jan, Vavra, Ondrej, Kokkonen, Piia, Filipovic, Jiri, Pinto, Gaspar, Brezovsky, Jan, Damborsky, Jiri, Bednar, David
Publicado 2019

PredictSNP: Robust and Accurate Consensus Classifier for Prediction of Disease-Related Mutations

por Bendl, Jaroslav, Stourac, Jan, Salanda, Ondrej, Pavelka, Antonin, Wieben, Eric D., Zendulka, Jaroslav, Brezovsky, Jan, Damborsky, Jiri
Publicado 2014

FireProt: web server for automated design of thermostable proteins

por Musil, Milos, Stourac, Jan, Bendl, Jaroslav, Brezovsky, Jan, Prokop, Zbynek, Zendulka, Jaroslav, Martinek, Tomas, Bednar, David, Damborsky, Jiri
Publicado 2017

FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants

por Bednar, David, Beerens, Koen, Sebestova, Eva, Bendl, Jaroslav, Khare, Sagar, Chaloupkova, Radka, Prokop, Zbynek, Brezovsky, Jan, Baker, David, Damborsky, Jiri
Publicado 2015

Restriction of access to the central cavity is a major contributor to substrate selectivity in plant ABCG transporters

por Pakuła, Konrad, Sequeiros-Borja, Carlos, Biała-Leonhard, Wanda, Pawela, Aleksandra, Banasiak, Joanna, Bailly, Aurélien, Radom, Marcin, Geisler, Markus, Brezovsky, Jan, Jasiński, Michał
Publicado 2023

Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17

por Chrast, Lukas, Tratsiak, Katsiaryna, Planas-Iglesias, Joan, Daniel, Lukas, Prudnikova, Tatyana, Brezovsky, Jan, Bednar, David, Kuta Smatanova, Ivana, Chaloupkova, Radka, Damborsky, Jiri
Publicado 2019

TransportTools: a library for high-throughput analyses of internal voids in biomolecules and ligand transport through them

por Brezovsky, Jan, Thirunavukarasu, Aravind Selvaram, Surpeta, Bartlomiej, Sequeiros-Borja, Carlos Eduardo, Mandal, Nishita, Sarkar, Dheeraj Kumar, Dongmo Foumthuim, Cedrix J, Agrawal, Nikhil
Publicado 2021

CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures

por Chovancova, Eva, Pavelka, Antonin, Benes, Petr, Strnad, Ondrej, Brezovsky, Jan, Kozlikova, Barbora, Gora, Artur, Sustr, Vilem, Klvana, Martin, Medek, Petr, Biedermannova, Lada, Sochor, Jiri, Damborsky, Jiri
Publicado 2012

CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories

por Jurcik, Adam, Bednar, David, Byska, Jan, Marques, Sergio M, Furmanova, Katarina, Daniel, Lukas, Kokkonen, Piia, Brezovsky, Jan, Strnad, Ondrej, Stourac, Jan, Pavelka, Antonin, Manak, Martin, Damborsky, Jiri, Kozlikova, Barbora
Publicado 2018

Tools and data services registry: a community effort to document bioinformatics resources

por Ison, Jon, Rapacki, Kristoffer, Ménager, Hervé, Kalaš, Matúš, Rydza, Emil, Chmura, Piotr, Anthon, Christian, Beard, Niall, Berka, Karel, Bolser, Dan, Booth, Tim, Bretaudeau, Anthony, Brezovsky, Jan, Casadio, Rita, Cesareni, Gianni, Coppens, Frederik, Cornell, Michael, Cuccuru, Gianmauro, Davidsen, Kristian, Vedova, Gianluca Della, Dogan, Tunca, Doppelt-Azeroual, Olivia, Emery, Laura, Gasteiger, Elisabeth, Gatter, Thomas, Goldberg, Tatyana, Grosjean, Marie, Grüning, Björn, Helmer-Citterich, Manuela, Ienasescu, Hans, Ioannidis, Vassilios, Jespersen, Martin Closter, Jimenez, Rafael, Juty, Nick, Juvan, Peter, Koch, Maximilian, Laibe, Camille, Li, Jing-Woei, Licata, Luana, Mareuil, Fabien, Mičetić, Ivan, Friborg, Rune Møllegaard, Moretti, Sebastien, Morris, Chris, Möller, Steffen, Nenadic, Aleksandra, Peterson, Hedi, Profiti, Giuseppe, Rice, Peter, Romano, Paolo, Roncaglia, Paola, Saidi, Rabie, Schafferhans, Andrea, Schwämmle, Veit, Smith, Callum, Sperotto, Maria Maddalena, Stockinger, Heinz, Vařeková, Radka Svobodová, Tosatto, Silvio C.E., de la Torre, Victor, Uva, Paolo, Via, Allegra, Yachdav, Guy, Zambelli, Federico, Vriend, Gert, Rost, Burkhard, Parkinson, Helen, Løngreen, Peter, Brunak, Søren
Publicado 2016