TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles

por Sarwal, Varuni, Brito, Jaqueline, Mangul, Serghei, Koslicki, David
Publicado 2023

Random access with a distributed Bitmap Join Index for Star Joins

por Brito, Jaqueline J., Mosqueiro, Thiago, Ciferri, Ricardo R., Ciferri, Cristina D.A.
Publicado 2020

pyTCR: A comprehensive and scalable solution for TCR-Seq data analysis to facilitate reproducibility and rigor of immunogenomics research

por Peng, Kerui, Moore, Jaden, Vahed, Mohammad, Brito, Jaqueline, Kao, Guoyun, Burkhardt, Amanda M., Alachkar, Houda, Mangul, Serghei
Publicado 2022

Recommendations to enhance rigor and reproducibility in biomedical research

por Brito, Jaqueline J, Li, Jun, Moore, Jason H, Greene, Casey S, Nogoy, Nicole A, Garmire, Lana X, Mangul, Serghei
Publicado 2020

Corrigendum to: Recommendations to enhance rigor and reproducibility in biomedical research

por Brito, Jaqueline J, Li, Jun, Moore, Jason H, Greene, Casey S, Nogoy, Nicole A, Garmire, Lana X, Mangul, Serghei
Publicado 2020

Telescope: an interactive tool for managing large-scale analysis from mobile devices

por Brito, Jaqueline J, Mosqueiro, Thiago, Rotman, Jeremy, Xue, Victor, Chapski, Douglas J, la Hoz, Juan De, Matias, Paulo, Martin, Lana S, Zelikovsky, Alex, Pellegrini, Matteo, Mangul, Serghei
Publicado 2020

Challenges and recommendations to improve the installability and archival stability of omics computational tools

por Mangul, Serghei, Mosqueiro, Thiago, Abdill, Richard J., Duong, Dat, Mitchell, Keith, Sarwal, Varuni, Hill, Brian, Brito, Jaqueline, Littman, Russell Jared, Statz, Benjamin, Lam, Angela Ka-Mei, Dayama, Gargi, Grieneisen, Laura, Martin, Lana S., Flint, Jonathan, Eskin, Eleazar, Blekhman, Ran
Publicado 2019

Successful treatment of pregnant women with syphilis and penicillin allergy

por Felix, Mara Morelo Rocha, Silva, Sônia Hoana, Bordalo, Cintia, Pinto, Marinauria Leal, De Mello, Monica De Britto Pereira Bandeira, De Brito, Jaqueline Ribeiro Toscano, Ferrão, Karla Do Carmo, Vianna, Jaqueline Coser, Grinapel, Raquel, Garcês, Andreia Albuquerque, De Souza, Monica Soares, Branco, Aniela Bonorino Xexeo Castelo
Publicado 2015

A survey study of medical knowledge about anaphylaxis

por Pinto, Marinauria Leal, Felix, Mara Morelo Rocha, Bordalo, Cintia, Silva, Sônia Hoana, Ferrão, Karla Do Carmo, De Mello, Monica De Britto Pereira Bandeira, De Brito, Jaqueline Ribeiro Toscano, Grinapel, Raquel, Branco, Aniela Bonorino Xexeo Castelo, Vianna, Jaqueline Coser, De Souza, Monica Soares, Garcês, Andreia Albuquerque
Publicado 2015

Benchmarking of computational error-correction methods for next-generation sequencing data

por Mitchell, Keith, Brito, Jaqueline J., Mandric, Igor, Wu, Qiaozhen, Knyazev, Sergey, Chang, Sei, Martin, Lana S., Karlsberg, Aaron, Gerasimov, Ekaterina, Littman, Russell, Hill, Brian L., Wu, Nicholas C., Yang, Harry Taegyun, Hsieh, Kevin, Chen, Linus, Littman, Eli, Shabani, Taylor, Enik, German, Yao, Douglas, Sun, Ren, Schroeder, Jan, Eskin, Eleazar, Zelikovsky, Alex, Skums, Pavel, Pop, Mihai, Mangul, Serghei
Publicado 2020

Critical Assessment of Metagenome Interpretation: the second round of challenges

por Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Antipov, Dmitry, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J., Brown, C. Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Clausen, Philip T. L. C., Cristian, Alexandru, Dabrowski, Piotr Wojciech, Darling, Aaron E., Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A., Hansen, Lars Hestbjerg, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Jørgensen, Tue Sparholt, Kieser, Silas D., Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Korobeynikov, Anton, Kwan, Jason, LaPierre, Nathan, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marcelino, Vanessa R., Marchet, Camille, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R., Milanese, Alessio, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas, Peterlongo, Pierre, Piro, Vitor C., Porter, Jacob S., Rasmussen, Simon, Rees, Evan R., Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L., Ruscheweyh, Hans-Joachim, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn
Publicado 2022