Automated Training for Algorithms That Learn from Genomic Data

por Cilingir, Gokcen, Broschat, Shira L.
Publicado 2015

A Fast Alignment-Free Approach for De Novo Detection of Protein Conserved Regions

por Abnousi, Armen, Broschat, Shira L., Kalyanaraman, Ananth
Publicado 2016

Alignment-free clustering of large data sets of unannotated protein conserved regions using minhashing

por Abnousi, Armen, Broschat, Shira L., Kalyanaraman, Ananth
Publicado 2018

A Java-based tool for the design of classification microarrays

por Meng, Da, Broschat, Shira L, Call, Douglas R
Publicado 2008

ApicoAP: The First Computational Model for Identifying Apicoplast-Targeted Proteins in Multiple Species of Apicomplexa

por Cilingir, Gokcen, Broschat, Shira L., Lau, Audrey O. T.
Publicado 2012

Using Protein Clusters from Whole Proteomes to Construct and Augment a Dendrogram

por Zhou, Yunyun, Call, Douglas R., Broschat, Shira L.
Publicado 2013

Whole-Proteome Analysis of Twelve Species of Alphaproteobacteria Links Four Pathogens

por Zhou, Yunyun, Call, Douglas R., Broschat, Shira L.
Publicado 2013

Comparative genomics reveals multiple pathways to mutualism for tick-borne pathogens

por Lockwood, Svetlana, Brayton, Kelly A., Broschat, Shira L.
Publicado 2016

A Systematic Approach to Bacterial Phylogeny Using Order Level Sampling and Identification of HGT Using Network Science

por Khaledian, Ehdieh, Brayton, Kelly A., Broschat, Shira L.
Publicado 2020

PASS: Protein Annotation Surveillance Site for Protein Annotation Using Homologous Clusters, NLP, and Sequence Similarity Networks

por Tao, Jin, Brayton, Kelly A., Broschat, Shira L.
Publicado 2021

Using an optimal set of features with a machine learning-based approach to predict effector proteins for Legionella pneumophila

por Esna Ashari, Zhila, Brayton, Kelly A., Broschat, Shira L.
Publicado 2019

Prediction of T4SS Effector Proteins for Anaplasma phagocytophilum Using OPT4e, A New Software Tool

por Esna Ashari, Zhila, Brayton, Kelly A., Broschat, Shira L.
Publicado 2019

Antimicrobial Resistance Prediction for Gram-Negative Bacteria via Game Theory-Based Feature Evaluation

por Chowdhury, Abu Sayed, Call, Douglas R., Broschat, Shira L.
Publicado 2019

Publisher Correction: Antimicrobial Resistance Prediction for Gram-Negative Bacteria via Game Theory-Based Feature Evaluation

por Chowdhury, Abu Sayed, Call, Douglas R., Broschat, Shira L.
Publicado 2020

PARGT: a software tool for predicting antimicrobial resistance in bacteria

por Chowdhury, Abu Sayed, Call, Douglas R., Broschat, Shira L.
Publicado 2020

An optimal set of features for predicting type IV secretion system effector proteins for a subset of species based on a multi-level feature selection approach

por Esna Ashari, Zhila, Dasgupta, Nairanjana, Brayton, Kelly A., Broschat, Shira L.
Publicado 2018

Whole Proteome Clustering of 2,307 Proteobacterial Genomes Reveals Conserved Proteins and Significant Annotation Issues

por Lockwood, Svetlana, Brayton, Kelly A., Daily, Jeff A., Broschat, Shira L.
Publicado 2019

Sequence determinants of human-cell entry identified in ACE2-independent bat sarbecoviruses: A combined laboratory and computational network science approach

por Khaledian, Ehdieh, Ulusan, Sinem, Erickson, Jeffery, Fawcett, Stephen, Letko, Michael C., Broschat, Shira L.
Publicado 2022

Dynamics of repeat-associated plasticity in the aaap gene family in Anaplasma marginale

por Fallquist, Heather M., Tao, Jin, Cheng, Xiaoya, Pierlé, Sebastian Aguilar, Broschat, Shira L., Brayton, Kelly A.
Publicado 2019

Identification of Anaplasma marginale Type IV Secretion System Effector Proteins

por Lockwood, Svetlana, Voth, Daniel E., Brayton, Kelly A., Beare, Paul A., Brown, Wendy C., Heinzen, Robert A., Broschat, Shira L.
Publicado 2011