Profiling the airway in the macaque model of tuberculosis reveals variable microbial dysbiosis and alteration of community structure

por Cadena, Anthony M, Ma, Yixuan, Ding, Tao, Bryant, MacKenzie, Maiello, Pauline, Geber, Adam, Lin, Philana Ling, Flynn, JoAnne L, Ghedin, Elodie
Publicado 2018

Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition

por Marotz, Clarisse, Cavagnero, Kellen J., Song, Se Jin, McDonald, Daniel, Wandro, Stephen, Humphrey, Greg, Bryant, MacKenzie, Ackermann, Gail, Diaz, Edgar, Knight, Rob
Publicado 2021

Effects of Variation in Urine Sample Storage Conditions on 16S Urogenital Microbiome Analyses

por Kumar, Tanya, Bryant, MacKenzie, Cantrell, Kalen, Song, Se Jin, McDonald, Daniel, Tubb, Helena M., Farmer, Sawyer, Lukacz, Emily S., Brubaker, Linda, Knight, Rob
Publicado 2022

Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution

por Brennan, Caitriona, Salido, Rodolfo A., Belda-Ferre, Pedro, Bryant, MacKenzie, Cowart, Charles, Tiu, Maria D., González, Antonio, McDonald, Daniel, Tribelhorn, Caitlin, Zarrinpar, Amir, Knight, Rob
Publicado 2023

Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol

por Pendergraft, Matthew A., Belda-Ferre, Pedro, Petras, Daniel, Morris, Clare K., Mitts, Brock A., Aron, Allegra T., Bryant, MacKenzie, Schwartz, Tara, Ackermann, Gail, Humphrey, Greg, Kaandorp, Ethan, Dorrestein, Pieter C., Knight, Rob, Prather, Kimberly A.
Publicado 2023

Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV

por Taylor, Bryn C., Weldon, Kelly C., Ellis, Ronald J., Franklin, Donald, McDonald, Daniel, Humphrey, Gregory, Bryant, MacKenzie, Toronczak, Julia, Schwartz, Tara, Iudicello, Jennifer, Heaton, Robert, Grant, Igor, Gianella, Sara, Letendre, Scott, Swafford, Austin, Dorrestein, Pieter C., Knight, Rob
Publicado 2020

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities

por Shaffer, Justin P., Marotz, Clarisse, Belda-Ferre, Pedro, Martino, Cameron, Wandro, Stephen, Estaki, Mehrbod, Salido, Rodolfo A., Carpenter, Carolina S., Zaramela, Livia S., Minich, Jeremiah J., Bryant, MacKenzie, Sanders, Karenina, Fraraccio, Serena, Ackermann, Gail, Humphrey, Gregory, Swafford, Austin D., Miller-Montgomery, Sandrine, Knight, Rob
Publicado 2020

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities

por Shaffer, Justin P, Marotz, Clarisse, Belda-Ferre, Pedro, Martino, Cameron, Wandro, Stephen, Estaki, Mehrbod, Salido, Rodolfo A, Carpenter, Carolina S, Zaramela, Livia S, Minich, Jeremiah J, Bryant, MacKenzie, Sanders, Karenina, Fraraccio, Serena, Ackermann, Gail, Humphrey, Gregory, Swafford, Austin D, Miller-Montgomery, Sandrine, Knight, Rob
Publicado 2021

Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

por Taylor, Bryn C., Weldon, Kelly C., Ellis, Ronald J., Franklin, Donald, Groth, Tobin, Gentry, Emily C., Tripathi, Anupriya, McDonald, Daniel, Humphrey, Gregory, Bryant, MacKenzie, Toronczak, Julia, Schwartz, Tara, Oliveira, Michelli F., Heaton, Robert, Grant, Igor, Gianella, Sara, Letendre, Scott, Swafford, Austin, Dorrestein, Pieter C., Knight, Rob
Publicado 2020

Multi-omics analyses of the Ulcerative Colitis gut microbiome link Bacteroides vulgatus proteases with disease severity

por Mills, Robert H., Dulai, Parambir S., Vázquez-Baeza, Yoshiki, Sauceda, Consuelo, Daniel, Noëmie, Gerner, Romana R., Batachari, Lakshmi E., Ochoa, Mario Malfavon, Zhu, Qiyun, Weldon, Kelly, Humphrey, Greg, Carrillo-Terrazas, Marvic, Goldasich, Lindsay DeRight, Bryant, MacKenzie, Raffatellu, Manuela, Quinn, Robert A., Gewirtz, Andrew T., Chassaing, Benoit, Chu, Hiutung, Sandborn, William J., Dorrestein, Pieter C., Knight, Rob, Gonzalez, David J.
Publicado 2022

Gut microbiota, circulating inflammatory markers and metabolites, and carotid artery atherosclerosis in HIV infection

por Wang, Zheng, Peters, Brandilyn A., Bryant, MacKenzie, Hanna, David B., Schwartz, Tara, Wang, Tao, Sollecito, Christopher C., Usyk, Mykhaylo, Grassi, Evan, Wiek, Fanua, Peter, Lauren St., Post, Wendy S., Landay, Alan L., Hodis, Howard N., Weber, Kathleen M., French, Audrey, Golub, Elizabeth T., Lazar, Jason, Gustafson, Deborah, Sharma, Anjali, Anastos, Kathryn, Clish, Clary B., Burk, Robert D., Kaplan, Robert C., Knight, Rob, Qi, Qibin
Publicado 2023

SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment

por Marotz, Clarisse, Belda-Ferre, Pedro, Ali, Farhana, Das, Promi, Huang, Shi, Cantrell, Kalen, Jiang, Lingjing, Martino, Cameron, Diner, Rachel E., Rahman, Gibraan, McDonald, Daniel, Armstrong, George, Kodera, Sho, Donato, Sonya, Ecklu-Mensah, Gertrude, Gottel, Neil, Salas Garcia, Mariana C., Chiang, Leslie Y., Salido, Rodolfo A., Shaffer, Justin P., Bryant, Mac Kenzie, Sanders, Karenina, Humphrey, Greg, Ackermann, Gail, Haiminen, Niina, Beck, Kristen L., Kim, Ho-Cheol, Carrieri, Anna Paola, Parida, Laxmi, Vázquez-Baeza, Yoshiki, Torriani, Francesca J., Knight, Rob, Gilbert, Jack, Sweeney, Daniel A., Allard, Sarah M.
Publicado 2021

Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment

por Marotz, Clarisse, Belda-Ferre, Pedro, Ali, Farhana, Das, Promi, Huang, Shi, Cantrell, Kalen, Jiang, Lingjing, Martino, Cameron, Diner, Rachel E., Rahman, Gibraan, McDonald, Daniel, Armstrong, George, Kodera, Sho, Donato, Sonya, Ecklu-Mensah, Gertrude, Gottel, Neil, Garcia, Mariana C. Salas, Chiang, Leslie Y., Salido, Rodolfo A., Shaffer, Justin P., Bryant, MacKenzie, Sanders, Karenina, Humphrey, Greg, Ackermann, Gail, Haiminen, Niina, Beck, Kristen L., Kim, Ho-Cheol, Carrieri, Anna Paola, Parida, Laxmi, Vázquez-Baeza, Yoshiki, Torriani, Francesca J., Knight, Rob, Gilbert, Jack A., Sweeney, Daniel A., Allard, Sarah M.
Publicado 2020

SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp.

por Cantú, Victor J, Salido, Rodolfo A., Huang, Shi, Rahman, Gibraan, Tsai, Rebecca, Valentine, Holly, Magallanes, Celestine G., Aigner, Stefan, Baer, Nathan A., Barber, Tom, Belda-Ferre, Pedro, Betty, Maryann, Bryant, MacKenzie, Maya, Martin Casas, Castro-Martínez, Anelizze, Chacón, Marisol, Cheung, Willi, Crescini, Evelyn S., De Hoff, Peter, Eisner, Emily, Farmer, Sawyer, Hakim, Abbas, Kohn, Laura, Lastrella, Alma L., Lawrence, Elijah S., Morgan, Sydney C., Ngo, Toan T., Nouri, Alhakam, Ostrander, R Tyler, Plascencia, Ashley, Ruiz, Christopher A., Sathe, Shashank, Seaver, Phoebe, Shwartz, Tara, Smoot, Elizabeth W., Valles, Thomas, Yeo, Gene W., Laurent, Louise C., Fielding-Miller, Rebecca, Knight, Rob
Publicado 2021

SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp.

por Cantú, Victor J., Salido, Rodolfo A., Huang, Shi, Rahman, Gibraan, Tsai, Rebecca, Valentine, Holly, Magallanes, Celestine G., Aigner, Stefan, Baer, Nathan A., Barber, Tom, Belda-Ferre, Pedro, Betty, Maryann, Bryant, MacKenzie, Casas Maya, Martín, Castro-Martínez, Anelizze, Chacón, Marisol, Cheung, Willi, Crescini, Evelyn S., De Hoff, Peter, Eisner, Emily, Farmer, Sawyer, Hakim, Abbas, Kohn, Laura, Lastrella, Alma L., Lawrence, Elijah S., Morgan, Sydney C., Ngo, Toan T., Nouri, Alhakam, Plascencia, Ashley, Ruiz, Christopher A., Sathe, Shashank, Seaver, Phoebe, Shwartz, Tara, Smoot, Elizabeth W., Ostrander, R. Tyler, Valles, Thomas, Yeo, Gene W., Laurent, Louise C., Fielding-Miller, Rebecca, Knight, Rob
Publicado 2022

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

por Shaffer, Justin P., Nothias, Louis-Félix, Thompson, Luke R., Sanders, Jon G., Salido, Rodolfo A., Couvillion, Sneha P., Brejnrod, Asker D., Lejzerowicz, Franck, Haiminen, Niina, Huang, Shi, Lutz, Holly L., Zhu, Qiyun, Martino, Cameron, Morton, James T., Karthikeyan, Smruthi, Nothias-Esposito, Mélissa, Dührkop, Kai, Böcker, Sebastian, Kim, Hyun Woo, Aksenov, Alexander A., Bittremieux, Wout, Minich, Jeremiah J., Marotz, Clarisse, Bryant, MacKenzie M., Sanders, Karenina, Schwartz, Tara, Humphrey, Greg, Vásquez-Baeza, Yoshiki, Tripathi, Anupriya, Parida, Laxmi, Carrieri, Anna Paola, Beck, Kristen L., Das, Promi, González, Antonio, McDonald, Daniel, Ladau, Joshua, Karst, Søren M., Albertsen, Mads, Ackermann, Gail, DeReus, Jeff, Thomas, Torsten, Petras, Daniel, Shade, Ashley, Stegen, James, Song, Se Jin, Metz, Thomas O., Swafford, Austin D., Dorrestein, Pieter C., Jansson, Janet K., Gilbert, Jack A., Knight, Rob
Publicado 2022