MCbiclust: a novel algorithm to discover large-scale functionally related gene sets from massive transcriptomics data collections

por Bentham, Robert B., Bryson, Kevin, Szabadkai, Gyorgy
Publicado 2017

A Meta-Analysis of Microarray Gene Expression in Mouse Stem Cells: Redefining Stemness

por Edwards, Yvonne J. K., Bryson, Kevin, Jones, David T.
Publicado 2008

Protein function prediction by massive integration of evolutionary analyses and multiple data sources

por Cozzetto, Domenico, Buchan, Daniel WA, Bryson, Kevin, Jones, David T
Publicado 2013

Adversarial generation of gene expression data

por Viñas, Ramon, Andrés-Terré, Helena, Liò, Pietro, Bryson, Kevin
Publicado 2021

High throughput profile-profile based fold recognition for the entire human proteome

por McGuffin, Liam J, Smith, Richard T, Bryson, Kevin, Sørensen, Søren-Aksel, Jones, David T
Publicado 2006

Scalable web services for the PSIPRED Protein Analysis Workbench

por Buchan, Daniel W. A., Minneci, Federico, Nugent, Tim C. O., Bryson, Kevin, Jones, David T.
Publicado 2013

TopNEXt: automatic DDA exclusion framework for multi-sample mass spectrometry experiments

por McBride, Ross, Wandy, Joe, Weidt, Stefan, Rogers, Simon, Davies, Vinny, Daly, Rónán, Bryson, Kevin
Publicado 2023

Protein structure prediction servers at University College London

por Bryson, Kevin, McGuffin, Liam J., Marsden, Russell L., Ward, Jonathan J., Sodhi, Jaspreet S., Jones, David T.
Publicado 2005

Simulated-to-real benchmarking of acquisition methods in untargeted metabolomics

por Wandy, Joe, McBride, Ross, Rogers, Simon, Terzis, Nikolaos, Weidt, Stefan, van der Hooft, Justin J. J., Bryson, Kevin, Daly, Rónán, Davies, Vinny
Publicado 2023

The breast cancer oncogene IKKε coordinates mitochondrial function and serine metabolism

por Xu, Ruoyan, Jones, William, Wilcz‐Villega, Ewa, Costa, Ana SH, Rajeeve, Vinothini, Bentham, Robert B, Bryson, Kevin, Nagano, Ai, Yaman, Busra, Olendo Barasa, Sheila, Wang, Yewei, Chelala, Claude, Cutillas, Pedro, Szabadkai, Gyorgy, Frezza, Christian, Bianchi, Katiuscia
Publicado 2020

Highly polygenic architecture of antidepressant treatment response: Comparative analysis of SSRI and NRI treatment in an animal model of depression

por Malki, Karim, Tosto, Maria Grazia, Mouriño‐Talín, Héctor, Rodríguez‐Lorenzo, Sabela, Pain, Oliver, Jumhaboy, Irfan, Liu, Tina, Parpas, Panos, Newman, Stuart, Malykh, Artem, Carboni, Lucia, Uher, Rudolf, McGuffin, Peter, Schalkwyk, Leonard C., Bryson, Kevin, Herbster, Mark
Publicado 2016

Host-Microbe Co-metabolism Dictates Cancer Drug Efficacy in C. elegans

por Scott, Timothy A., Quintaneiro, Leonor M., Norvaisas, Povilas, Lui, Prudence P., Wilson, Matthew P., Leung, Kit-Yi, Herrera-Dominguez, Lucia, Sudiwala, Sonia, Pessia, Alberto, Clayton, Peter T., Bryson, Kevin, Velagapudi, Vidya, Mills, Philippa B., Typas, Athanasios, Greene, Nicholas D.E., Cabreiro, Filipe
Publicado 2017

A Continuously Benchmarked and Crowdsourced Challenge for Rapid Development and Evaluation of Models to Predict COVID-19 Diagnosis and Hospitalization

por Yan, Yao, Schaffter, Thomas, Bergquist, Timothy, Yu, Thomas, Prosser, Justin, Aydin, Zafer, Jabeer, Amhar, Brugere, Ivan, Gao, Jifan, Chen, Guanhua, Causey, Jason, Yao, Yuxin, Bryson, Kevin, Long, Dustin R., Jarvik, Jeffrey G., Lee, Christoph I., Wilcox, Adam, Guinney, Justin, Mooney, Sean
Publicado 2021

Host-Microbe-Drug-Nutrient Screen Identifies Bacterial Effectors of Metformin Therapy

por Pryor, Rosina, Norvaisas, Povilas, Marinos, Georgios, Best, Lena, Thingholm, Louise B., Quintaneiro, Leonor M., De Haes, Wouter, Esser, Daniela, Waschina, Silvio, Lujan, Celia, Smith, Reuben L., Scott, Timothy A., Martinez-Martinez, Daniel, Woodward, Orla, Bryson, Kevin, Laudes, Matthias, Lieb, Wolfgang, Houtkooper, Riekelt H., Franke, Andre, Temmerman, Liesbet, Bjedov, Ivana, Cochemé, Helena M., Kaleta, Christoph, Cabreiro, Filipe
Publicado 2019

A large-scale evaluation of computational protein function prediction

por Radivojac, Predrag, Clark, Wyatt T, Oron, Tal Ronnen, Schnoes, Alexandra M, Wittkop, Tobias, Sokolov, Artem, Graim, Kiley, Funk, Christopher, Verspoor, Karin, Ben-Hur, Asa, Pandey, Gaurav, Yunes, Jeffrey M, Talwalkar, Ameet S, Repo, Susanna, Souza, Michael L, Piovesan, Damiano, Casadio, Rita, Wang, Zheng, Cheng, Jianlin, Fang, Hai, Gough, Julian, Koskinen, Patrik, Törönen, Petri, Nokso-Koivisto, Jussi, Holm, Liisa, Cozzetto, Domenico, Buchan, Daniel W A, Bryson, Kevin, Jones, David T, Limaye, Bhakti, Inamdar, Harshal, Datta, Avik, Manjari, Sunitha K, Joshi, Rajendra, Chitale, Meghana, Kihara, Daisuke, Lisewski, Andreas M, Erdin, Serkan, Venner, Eric, Lichtarge, Olivier, Rentzsch, Robert, Yang, Haixuan, Romero, Alfonso E, Bhat, Prajwal, Paccanaro, Alberto, Hamp, Tobias, Kaßner, Rebecca, Seemayer, Stefan, Vicedo, Esmeralda, Schaefer, Christian, Achten, Dominik, Auer, Florian, Boehm, Ariane, Braun, Tatjana, Hecht, Maximilian, Heron, Mark, Hönigschmid, Peter, Hopf, Thomas A, Kaufmann, Stefanie, Kiening, Michael, Krompass, Denis, Landerer, Cedric, Mahlich, Yannick, Roos, Manfred, Björne, Jari, Salakoski, Tapio, Wong, Andrew, Shatkay, Hagit, Gatzmann, Fanny, Sommer, Ingolf, Wass, Mark N, Sternberg, Michael J E, Škunca, Nives, Supek, Fran, Bošnjak, Matko, Panov, Panče, Džeroski, Sašo, Šmuc, Tomislav, Kourmpetis, Yiannis A I, van Dijk, Aalt D J, Braak, Cajo J F ter, Zhou, Yuanpeng, Gong, Qingtian, Dong, Xinran, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Di Camillo, Barbara, Toppo, Stefano, Lan, Liang, Djuric, Nemanja, Guo, Yuhong, Vucetic, Slobodan, Bairoch, Amos, Linial, Michal, Babbitt, Patricia C, Brenner, Steven E, Orengo, Christine, Rost, Burkhard, Mooney, Sean D, Friedberg, Iddo
Publicado 2013

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

por Jiang, Yuxiang, Oron, Tal Ronnen, Clark, Wyatt T., Bankapur, Asma R., D’Andrea, Daniel, Lepore, Rosalba, Funk, Christopher S., Kahanda, Indika, Verspoor, Karin M., Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed M. E., Martelli, Pier Luigi, Profiti, Giuseppe, Casadio, Rita, Cao, Renzhi, Zhong, Zhaolong, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Dogan, Tunca, Hakala, Kai, Kaewphan, Suwisa, Mehryary, Farrokh, Salakoski, Tapio, Ginter, Filip, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Törönen, Petri, Koskinen, Patrik, Holm, Liisa, Chen, Ching-Tai, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T., Chapman, Samuel, BKC, Dukka, Khan, Ishita K., Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Stern, Amos, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E., Hieta, Reija, Legge, Duncan, Lovering, Ruth C., Magrane, Michele, Melidoni, Anna N., Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L., Lee, David, Lees, Jonathan G., Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Romero, Alfonso E., Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Sedeño-Cortés, Adriana E., Pavlidis, Paul, Feng, Shou, Cejuela, Juan M., Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Gabaldon, Toni, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Ning, Wei, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Ferrari, Carlo, Giollo, Manuel, Piovesan, Damiano, Tosatto, Silvio C.E., del Pozo, Angela, Fernández, José M., Maietta, Paolo, Valencia, Alfonso, Tress, Michael L., Benso, Alfredo, Di Carlo, Stefano, Politano, Gianfranco, Savino, Alessandro, Rehman, Hafeez Ur, Re, Matteo, Mesiti, Marco, Valentini, Giorgio, Bargsten, Joachim W., van Dijk, Aalt D. J., Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Almeida-e-Silva, Danillo C., Vencio, Ricardo Z. N., Sharan, Malvika, Vogel, Jörg, Kansakar, Lakesh, Zhang, Shanshan, Vucetic, Slobodan, Wang, Zheng, Sternberg, Michael J. E., Wass, Mark N., Huntley, Rachael P., Martin, Maria J., O’Donovan, Claire, Robinson, Peter N., Moreau, Yves, Tramontano, Anna, Babbitt, Patricia C., Brenner, Steven E., Linial, Michal, Orengo, Christine A., Rost, Burkhard, Greene, Casey S., Mooney, Sean D., Friedberg, Iddo, Radivojac, Predrag
Publicado 2016