Entrezpy: a Python library to dynamically interact with the NCBI Entrez databases

por Buchmann, Jan P, Holmes, Edward C
Publicado 2019

Collecting and managing taxonomic data with NCBI-taxonomist

por Buchmann, Jan P, Holmes, Edward C
Publicado 2020

The Biological Object Notation (BON): a structured file format for biological data

por Buchmann, Jan P., Fourment, Mathieu, Holmes, Edward C.
Publicado 2018

A Simple Method to Detect Candidate Overlapping Genes in Viruses Using Single Genome Sequences

por Schlub, Timothy E, Buchmann, Jan P, Holmes, Edward C
Publicado 2018

Analysis of CACTA transposases reveals intron loss as major factor influencing their exon/intron structure in monocotyledonous and eudicotyledonous hosts

por Buchmann, Jan P, Löytynoja, Ari, Wicker, Thomas, Schulman, Alan H
Publicado 2014

RdRp-scan: A bioinformatic resource to identify and annotate divergent RNA viruses in metagenomic sequence data

por Charon, Justine, Buchmann, Jan P, Sadiq, Sabrina, Holmes, Edward C
Publicado 2022

Coding-Complete Genome Sequence of Yada Yada Virus, a Novel Alphavirus Detected in Australian Mosquitoes

por Batovska, Jana, Buchmann, Jan P., Holmes, Edward C., Lynch, Stacey E.
Publicado 2020

Correction for Batovska et al., “Coding-Complete Genome Sequence of Yada Yada Virus, a Novel Alphavirus Detected in Australian Mosquitoes”

por Batovska, Jana, Buchmann, Jan P., Holmes, Edward C., Lynch, Stacey E.
Publicado 2020

Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defense responses to Erwinia amylovora pathogen infection

por Kamber, Tim, Buchmann, Jan P., Pothier, Joël F., Smits, Theo H. M., Wicker, Thomas, Duffy, Brion
Publicado 2016

Virological Sampling of Inaccessible Wildlife with Drones

por Geoghegan, Jemma L., Pirotta, Vanessa, Harvey, Erin, Smith, Alastair, Buchmann, Jan P., Ostrowski, Martin, Eden, John-Sebastian, Harcourt, Robert, Holmes, Edward C.
Publicado 2018

CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data

por Marcelino, Vanessa R., Clausen, Philip T. L. C., Buchmann, Jan P., Wille, Michelle, Iredell, Jonathan R., Meyer, Wieland, Lund, Ole, Sorrell, Tania C., Holmes, Edward C.
Publicado 2020

Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic

por Simon-Loriere, Etienne, Faye, Ousmane, Faye, Oumar, Koivogui, Lamine, Magassouba, Nfaly, Keita, Sakoba, Thiberge, Jean-Michel, Diancourt, Laure, Bouchier, Christiane, Vandenbogaert, Matthias, Caro, Valérie, Fall, Gamou, Buchmann, Jan P., Matranga, Christan B., Sabeti, Pardis C., Manuguerra, Jean-Claude, Holmes, Edward C., Sall, Amadou A.
Publicado 2015

17(th) Century Variola Virus Reveals the Recent History of Smallpox

por Duggan, Ana T., Perdomo, Maria F., Piombino-Mascali, Dario, Marciniak, Stephanie, Poinar, Debi, Emery, Matthew V., Buchmann, Jan P., Duchêne, Sebastian, Jankauskas, Rimantas, Humphreys, Margaret, Golding, G. Brian, Southon, John, Devault, Alison, Rouillard, Jean-Marie, Sahl, Jason W., Dutour, Olivier, Hedman, Klaus, Sajantila, Antti, Smith, Geoffrey L., Holmes, Edward C., Poinar, Hendrik N.
Publicado 2016

NCBI’s Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements

por Connor, Ryan, Brister, Rodney, Buchmann, Jan P., Deboutte, Ward, Edwards, Rob, Martí-Carreras, Joan, Tisza, Mike, Zalunin, Vadim, Andrade-Martínez, Juan, Cantu, Adrian, D’Amour, Michael, Efremov, Alexandre, Fleischmann, Lydia, Forero-Junco, Laura, Garmaeva, Sanzhima, Giluso, Melissa, Glickman, Cody, Henderson, Margaret, Kellman, Benjamin, Kristensen, David, Leubsdorf, Carl, Levi, Kyle, Levi, Shane, Pakala, Suman, Peddu, Vikas, Ponsero, Alise, Ribeiro, Eldred, Roy, Farrah, Rutter, Lindsay, Saha, Surya, Shakya, Migun, Shean, Ryan, Miller, Matthew, Tully, Benjamin, Turkington, Christopher, Youens-Clark, Ken, Vanmechelen, Bert, Busby, Ben
Publicado 2019

NCBI’s Virus Discovery Codeathon: Building “FIVE” —The Federated Index of Viral Experiments API Index

por Martí-Carreras, Joan, Gener, Alejandro Rafael, Miller, Sierra D., Brito, Anderson F., Camacho, Christiam E., Connor, Ryan, Deboutte, Ward, Glickman, Cody, Kristensen, David M., Meyer, Wynn K., Modha, Sejal, Norris, Alexis L., Saha, Surya, Belford, Anna K., Biederstedt, Evan, Brister, James Rodney, Buchmann, Jan P., Cooley, Nicholas P., Edwards, Robert A., Javkar, Kiran, Muchow, Michael, Muralidharan, Harihara Subrahmaniam, Pepe-Ranney, Charles, Shah, Nidhi, Shakya, Migun, Tisza, Michael J., Tully, Benjamin J., Vanmechelen, Bert, Virta, Valerie C., Weissman, JL, Zalunin, Vadim, Efremov, Alexandre, Busby, Ben
Publicado 2020