Capillary-Based and Stokes-Based Trapping of Serial Sections for Scalable 3D-EM Connectomics

por Lee, Timothy J., Yip, Mighten C., Kumar, Aditi, Lewallen, Colby F., Bumbarger, Daniel J., Reid, R. Clay, Forest, Craig R.
Publicado 2020

Evolution of neuronal anatomy and circuitry in two highly divergent nematode species

por Hong, Ray L, Riebesell, Metta, Bumbarger, Daniel J, Cook, Steven J, Carstensen, Heather R, Sarpolaki, Tahmineh, Cochella, Luisa, Castrejon, Jessica, Moreno, Eduardo, Sieriebriennikov, Bogdan, Hobert, Oliver, Sommer, Ralf J
Publicado 2019

Large-scale neuroanatomy using LASSO: Loop-based Automated Serial Sectioning Operation

por Lee, Timothy J., Kumar, Aditi, Balwani, Aishwarya H., Brittain, Derrick, Kinn, Sam, Tovey, Craig A., Dyer, Eva L., da Costa, Nuno M., Reid, R. Clay, Forest, Craig R., Bumbarger, Daniel J.
Publicado 2018

A petascale automated imaging pipeline for mapping neuronal circuits with high-throughput transmission electron microscopy

por Yin, Wenjing, Brittain, Derrick, Borseth, Jay, Scott, Marie E., Williams, Derric, Perkins, Jedediah, Own, Christopher S., Murfitt, Matthew, Torres, Russel M., Kapner, Daniel, Mahalingam, Gayathri, Bleckert, Adam, Castelli, Daniel, Reid, David, Lee, Wei-Chung Allen, Graham, Brett J., Takeno, Marc, Bumbarger, Daniel J., Farrell, Colin, Reid, R. Clay, da Costa, Nuno Macarico
Publicado 2020

A scalable and modular automated pipeline for stitching of large electron microscopy datasets

por Mahalingam, Gayathri, Torres, Russel, Kapner, Daniel, Trautman, Eric T, Fliss, Tim, Seshamani, Shamishtaa, Perlman, Eric, Young, Rob, Kinn, Samuel, Buchanan, JoAnn, Takeno, Marc M, Yin, Wenjing, Bumbarger, Daniel J, Gwinn, Ryder P, Nyhus, Julie, Lein, Ed, Smith, Steven J, Reid, R Clay, Khairy, Khaled A, Saalfeld, Stephan, Collman, Forrest, Macarico da Costa, Nuno
Publicado 2022

Structure and function of axo-axonic inhibition

por Schneider-Mizell, Casey M, Bodor, Agnes L, Collman, Forrest, Brittain, Derrick, Bleckert, Adam, Dorkenwald, Sven, Turner, Nicholas L, Macrina, Thomas, Lee, Kisuk, Lu, Ran, Wu, Jingpeng, Zhuang, Jun, Nandi, Anirban, Hu, Brian, Buchanan, JoAnn, Takeno, Marc M, Torres, Russel, Mahalingam, Gayathri, Bumbarger, Daniel J, Li, Yang, Chartrand, Thomas, Kemnitz, Nico, Silversmith, William M, Ih, Dodam, Zung, Jonathan, Zlateski, Aleksandar, Tartavull, Ignacio, Popovych, Sergiy, Wong, William, Castro, Manuel, Jordan, Chris S, Froudarakis, Emmanouil, Becker, Lynne, Suckow, Shelby, Reimer, Jacob, Tolias, Andreas S, Anastassiou, Costas A, Seung, H Sebastian, Reid, R Clay, da Costa, Nuno Maçarico
Publicado 2021

Binary and analog variation of synapses between cortical pyramidal neurons

por Dorkenwald, Sven, Turner, Nicholas L, Macrina, Thomas, Lee, Kisuk, Lu, Ran, Wu, Jingpeng, Bodor, Agnes L, Bleckert, Adam A, Brittain, Derrick, Kemnitz, Nico, Silversmith, William M, Ih, Dodam, Zung, Jonathan, Zlateski, Aleksandar, Tartavull, Ignacio, Yu, Szi-Chieh, Popovych, Sergiy, Wong, William, Castro, Manuel, Jordan, Chris S, Wilson, Alyssa M, Froudarakis, Emmanouil, Buchanan, JoAnn, Takeno, Marc M, Torres, Russel, Mahalingam, Gayathri, Collman, Forrest, Schneider-Mizell, Casey M, Bumbarger, Daniel J, Li, Yang, Becker, Lynne, Suckow, Shelby, Reimer, Jacob, Tolias, Andreas S, Macarico da Costa, Nuno, Reid, R Clay, Seung, H Sebastian
Publicado 2022

CAVE: Connectome Annotation Versioning Engine

por Dorkenwald, Sven, Schneider-Mizell, Casey M., Brittain, Derrick, Halageri, Akhilesh, Jordan, Chris, Kemnitz, Nico, Castro, Manual A., Silversmith, William, Maitin-Shephard, Jeremy, Troidl, Jakob, Pfister, Hanspeter, Gillet, Valentin, Xenes, Daniel, Bae, J. Alexander, Bodor, Agnes L., Buchanan, JoAnn, Bumbarger, Daniel J., Elabbady, Leila, Jia, Zhen, Kapner, Daniel, Kinn, Sam, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mahalingam, Gayathri, Mitchell, Eric, Mondal, Shanka Subhra, Mu, Shang, Nehoran, Barak, Popovych, Sergiy, Takeno, Marc, Torres, Russel, Turner, Nicholas L., Wong, William, Wu, Jingpeng, Yin, Wenjing, Yu, Szi-chieh, Reid, R. Clay, da Costa, Nuno Maçarico, Seung, H. Sebastian, Collman, Forrest
Publicado 2023

Oligodendrocyte precursor cells ingest axons in the mouse neocortex

por Buchanan, JoAnn, Elabbady, Leila, Collman, Forrest, Jorstad, Nikolas L., Bakken, Trygve E., Ott, Carolyn, Glatzer, Jenna, Bleckert, Adam A., Bodor, Agnes L., Brittain, Derrick, Bumbarger, Daniel J., Mahalingam, Gayathri, Seshamani, Sharmishtaa, Schneider-Mizell, Casey, Takeno, Marc M., Torres, Russel, Yin, Wenjing, Hodge, Rebecca D., Castro, Manuel, Dorkenwald, Sven, Ih, Dodam, Jordan, Chris S., Kemnitz, Nico, Lee, Kisuk, Lu, Ran, Macrina, Thomas, Mu, Shang, Popovych, Sergiy, Silversmith, William M., Tartavull, Ignacio, Turner, Nicholas L., Wilson, Alyssa M., Wong, William, Wu, Jingpeng, Zlateski, Aleksandar, Zung, Jonathan, Lippincott-Schwartz, Jennifer, Lein, Ed S., Seung, H. Sebastian, Bergles, Dwight E., Reid, R. Clay, da Costa, Nuno Maçarico
Publicado 2022

Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex

por Schneider-Mizell, Casey M, Bodor, Agnes, Brittain, Derrick, Buchanan, JoAnn, Bumbarger, Daniel J., Elabbady, Leila, Kapner, Daniel, Kinn, Sam, Mahalingam, Gayathri, Seshamani, Sharmishtaa, Suckow, Shelby, Takeno, Marc, Torres, Russel, Yin, Wenjing, Dorkenwald, Sven, Bae, J. Alexander, Castro, Manuel A., Fahey, Paul G., Froudakis, Emmanouil, Halageri, Akhilesh, Jia, Zhen, Jordan, Chris, Kemnitz, Nico, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mitchell, Eric, Mondal, Shanka Subhra, Mu, Shang, Nehoran, Barak, Papadopoulos, Stelios, Patel, Saumil, Pitkow, Xaq, Popovych, Sergiy, Silversmith, William, Sinz, Fabian H., Turner, Nicholas L., Wong, William, Wu, Jingpeng, Yu, Szi-chieh, Reimer, Jacob, Tolias, Andreas S., Seung, H Sebastian, Reid, R Clay, Collman, Forrest, da Costa, Nuno Maçarico
Publicado 2023

Functional connectomics reveals general wiring rule in mouse visual cortex

por Ding, Zhuokun, Fahey, Paul G., Papadopoulos, Stelios, Wang, Eric Y., Celii, Brendan, Papadopoulos, Christos, Kunin, Alexander B., Chang, Andersen, Fu, Jiakun, Ding, Zhiwei, Patel, Saumil, Ponder, Kayla, Muhammad, Taliah, Bae, J. Alexander, Bodor, Agnes L., Brittain, Derrick, Buchanan, JoAnn, Bumbarger, Daniel J., Castro, Manuel A., Cobos, Erick, Dorkenwald, Sven, Elabbady, Leila, Halageri, Akhilesh, Jia, Zhen, Jordan, Chris, Kapner, Dan, Kemnitz, Nico, Kinn, Sam, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mahalingam, Gayathri, Mitchell, Eric, Mondal, Shanka Subhra, Mu, Shang, Nehoran, Barak, Popovych, Sergiy, Schneider-Mizell, Casey M., Silversmith, William, Takeno, Marc, Torres, Russel, Turner, Nicholas L., Wong, William, Wu, Jingpeng, Yin, Wenjing, Yu, Szi-chieh, Froudarakis, Emmanouil, Sinz, Fabian, Seung, H. Sebastian, Collman, Forrest, da Costa, Nuno Maçarico, Reid, R. Clay, Walker, Edgar Y., Pitkow, Xaq, Reimer, Jacob, Tolias, Andreas S.
Publicado 2023