Closing gaps between open software and public data in a hackathon setting: User-centered software prototyping

por Busby, Ben, Lesko, Matthew, Federer, Lisa
Publicado 2016

DangerTrack: A scoring system to detect difficult-to-assess regions

por Dolgalev, Igor, Sedlazeck, Fritz, Busby, Ben
Publicado 2017

Matchmaking in Bioinformatics

por Mathé, Ewy, Busby, Ben, Piontkivska, Helen
Publicado 2018

Predicting drug-metagenome interactions: Variation in the microbial β-glucuronidase level in the human gut metagenomes

por Elmassry, Moamen M., Kim, Sunghwan, Busby, Ben
Publicado 2021

Viewing RNA-seq data on the entire human genome

por Weitz, Eric M., Pantano, Lorena, Zhu, Jingzhi, Upton, Bennett, Busby, Ben
Publicado 2017

PubRunner: A light-weight framework for updating text mining results

por Anekalla, Kishore R., Courneya, J.P., Fiorini, Nicolas, Lever, Jake, Muchow, Michael, Busby, Ben
Publicado 2017

Magic-BLAST, an accurate RNA-seq aligner for long and short reads

por Boratyn, Grzegorz M., Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Busby, Ben, Madden, Thomas L.
Publicado 2019

Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive

por Bernstein, Matthew N., Gladstein, Ariella, Latt, Khun Zaw, Clough, Emily, Busby, Ben, Dillman, Allissa
Publicado 2020

Extending TCGA queries to automatically identify analogous genomic data from dbGaP

por Wagner, Erin K., Raje, Satyajeet, Amos, Liz, Kurata, Jessica, Badve, Abhijit S., Li, Yingquan, Busby, Ben
Publicado 2017

MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis

por Moyer, Eric, Hagenauer, Megan, Lesko, Matthew, Francis, Felix, Rodriguez, Oscar, Nagarajan, Vijayaraj, Huser, Vojtech, Busby, Ben
Publicado 2016

geneHummus: an R package to define gene families and their expression in legumes and beyond

por Die, Jose V., Elmassry, Moamen M., LeBlanc, Kimberly H., Awe, Olaitan I., Dillman, Allissa, Busby, Ben
Publicado 2019

Integrated Informatics Analysis of Cancer-Related Variants

por Pagel, Kymberleigh A., Kim, Rick, Moad, Kyle, Busby, Ben, Zheng, Lily, Tokheim, Collin, Ryan, Michael, Karchin, Rachel
Publicado 2020

NovoGraph: Human genome graph construction from multiple long-read de novo assemblies

por Biederstedt, Evan, Oliver, Jeffrey C., Hansen, Nancy F., Jajoo, Aarti, Dunn, Nathan, Olson, Andrew, Busby, Ben, Dilthey, Alexander T.
Publicado 2018

SeqAcademy: an educational pipeline for RNA-Seq and ChIP-Seq analysis

por Ather, Syed Hussain, Awe, Olaitan Igbagbo, Butler, Thomas J., Denka, Tamiru, Semick, Stephen Andrew, Tang, Wanhu, Busby, Ben
Publicado 2020

dbVar structural variant cluster set for data analysis and variant comparison

por Phan, Lon, Hsu, Jeffrey, Tri, Le Quang Minh, Willi, Michaela, Mansour, Tamer, Kai, Yan, Garner, John, Lopez, John, Busby, Ben
Publicado 2017

Acute and Chronic Pancreatitis Disease Prevalence, Classification, and Comorbidities: A Cohort Study of the UK BioBank

por Spagnolo, Daniel M., Greer, Phil J., Ohlsen, Celeste Shelton, Mance, Shannon, Ellison, Mitchell, Breze, Cameron, Busby, Ben, Whitcomb, David C., Haupt, Mark
Publicado 2022

VariantSurvival: a tool to identify genotype–treatment response

por Krannich, Thomas, Sarrias, Marina Herrera, Ben Aribi, Hiba, Shokrof, Moustafa, Iacoangeli, Alfredo, Al-Chalabi, Ammar, Sedlazeck, Fritz J., Busby, Ben, Al Khleifat, Ahmad
Publicado 2023

Mitogen-activated protein kinase signaling causes malignant melanoma cells to differentially alter extracellular matrix biosynthesis to promote cell survival

por Afasizheva, Anna, Devine, Alexus, Tillman, Heather, Fung, King Leung, Vieira, Wilfred D., Blehm, Benjamin H., Kotobuki, Yorihisa, Busby, Ben, Chen, Emily I., Tanner, Kandice
Publicado 2016

Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xa...

por Ohdera, Aki, Ames, Cheryl L, Dikow, Rebecca B, Kayal, Ehsan, Chiodin, Marta, Busby, Ben, La, Sean, Pirro, Stacy, Collins, Allen G, Medina, Mónica, Ryan, Joseph F
Publicado 2019

iCn3D: From Web-Based 3D Viewer to Structural Analysis Tool in Batch Mode

por Wang, Jiyao, Youkharibache, Philippe, Marchler-Bauer, Aron, Lanczycki, Christopher, Zhang, Dachuan, Lu, Shennan, Madej, Thomas, Marchler, Gabriele H., Cheng, Tiejun, Chong, Li Chuin, Zhao, Sarah, Yang, Kevin, Lin, Jack, Cheng, Zhiyu, Dunn, Rachel, Malkaram, Sridhar Acharya, Tai, Chin-Hsien, Enoma, David, Busby, Ben, Johnson, Nicholas L., Tabaro, Francesco, Song, Guangfeng, Ge, Yuchen
Publicado 2022