Read trimming has minimal effect on bacterial SNP-calling accuracy

por Bush, Stephen J.
Publicado 2020

Generalizable characteristics of false-positive bacterial variant calls

por Bush, Stephen J.
Publicado 2021

Lineage-specific sequence evolution and exon edge conservation partially explain the relationship between evolutionary rate and expression level in A. thaliana

por Bush, Stephen J, Kover, Paula X, Urrutia, Araxi O
Publicado 2015

Network analysis of the social and demographic influences on name choice within the UK (1838-2016)

por Bush, Stephen J., Powell-Smith, Anna, Freeman, Tom C.
Publicado 2018

Network analysis of transcriptomic diversity amongst resident tissue macrophages and dendritic cells in the mouse mononuclear phagocyte system

por Summers, Kim M., Bush, Stephen J., Hume, David A.
Publicado 2020

Generation and network analysis of an RNA-seq transcriptional atlas for the rat

por Summers, Kim M, Bush, Stephen J, Wu, Chunlei, Hume, David A
Publicado 2022

Contrasting gene‐level signatures of selection with reproductive fitness

por Bush, Stephen J., Murren, Courtney J., Urrutia, Araxi O., Kover, Paula X.
Publicado 2022

Correcting for Differential Transcript Coverage Reveals a Strong Relationship between Alternative Splicing and Organism Complexity

por Chen, Lu, Bush, Stephen J., Tovar-Corona, Jaime M., Castillo-Morales, Atahualpa, Urrutia, Araxi O.
Publicado 2014

Linezolid for Infants and Toddlers With Disseminated Tuberculosis: First Steps

por Deshpande, Devyani, Srivastava, Shashikant, Pasipanodya, Jotam G., Bush, Stephen J., Nuermberger, Eric, Swaminathan, Soumya, Gumbo, Tawanda
Publicado 2016

Evaluation of methods for detecting human reads in microbial sequencing datasets

por Bush, Stephen J., Connor, Thomas R., Peto, Tim E.A., Crook, Derrick W., Walker, A. Sarah
Publicado 2020

Transcriptomic Analysis of Rat Macrophages

por Pridans, Clare, Irvine, Katharine M., Davis, Gemma M., Lefevre, Lucas, Bush, Stephen J., Hume, David A.
Publicado 2021

Integration of quantitated expression estimates from polyA-selected and rRNA-depleted RNA-seq libraries

por Bush, Stephen J., McCulloch, Mary E. B., Summers, Kim M., Hume, David A., Clark, Emily L.
Publicado 2017

CRISPR-Cas9 Editing of Human Histone Deubiquitinase Gene USP16 in Human Monocytic Leukemia Cell Line THP-1

por Gažová, Iveta, Lefevre, Lucas, Bush, Stephen J., Rojo, Rocio, Hume, David A., Lengeling, Andreas, Summers, Kim M.
Publicado 2021

Presence–Absence Variation in A. thaliana Is Primarily Associated with Genomic Signatures Consistent with Relaxed Selective Constraints

por Bush, Stephen J., Castillo-Morales, Atahualpa, Tovar-Corona, Jaime M., Chen, Lu, Kover, Paula X., Urrutia, Araxi O.
Publicado 2014

Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome

por Bush, Stephen J., Muriuki, Charity, McCulloch, Mary E. B., Farquhar, Iseabail L., Clark, Emily L., Hume, David A.
Publicado 2018

Elimination of Reference Mapping Bias Reveals Robust Immune Related Allele-Specific Expression in Crossbred Sheep

por Salavati, Mazdak, Bush, Stephen J., Palma-Vera, Sergio, McCulloch, Mary E. B., Hume, David A., Clark, Emily L.
Publicado 2019

Genetic and genomic analyses underpin the feasibility of concomitant genetic improvement of milk yield and mastitis resistance in dairy sheep

por Banos, Georgios, Clark, Emily L., Bush, Stephen J., Dutta, Prasun, Bramis, Georgios, Arsenos, Georgios, Hume, David A., Psifidi, Androniki
Publicado 2019

MeDAS: a Metazoan Developmental Alternative Splicing database

por Li, Zhidan, Zhang, Yiming, Bush, Stephen J, Tang, Chao, Chen, Li, Zhang, Dan, Urrutia, Araxi O, Lin, Jing-wen, Chen, Lu
Publicado 2020

Optimization of next‐generation sequencing transcriptome annotation for species lacking sequenced genomes

por Ockendon, Nina F., O'Connell, Lauren A., Bush, Stephen J., Monzón‐Sandoval, Jimena, Barnes, Holly, Székely, Tamás, Hofmann, Hans A., Dorus, Steve, Urrutia, Araxi O.
Publicado 2015

A Mini-Atlas of Gene Expression for the Domestic Goat (Capra hircus)

por Muriuki, Charity, Bush, Stephen J., Salavati, Mazdak, McCulloch, Mary E.B., Lisowski, Zofia M., Agaba, Morris, Djikeng, Appolinaire, Hume, David A., Clark, Emily L.
Publicado 2019