Bioinformatic pipelines for whole transcriptome sequencing data exploitation in leukemia patients with complex structural variants

por Hynst, Jakub, Plevova, Karla, Radova, Lenka, Bystry, Vojtech, Pal, Karol, Pospisilova, Sarka
Publicado 2019

Transcriptome Profile Analyses of Head Kidney in Roach (Rutilus rutilus), Common Bream (Abramis brama) and Their Hybrids: Does Infection by Monogenean Parasites in Freshwater Fish...

por Šimková, Andrea, Civáňová Křížová, Kristína, Voříšková, Kristýna, Vetešník, Lukáš, Bystrý, Vojtěch, Demko, Martin
Publicado 2023

A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response

por Bousios, Alexandros, Diez, Concepcion M., Takuno, Shohei, Bystry, Vojtech, Darzentas, Nikos, Gaut, Brandon S.
Publicado 2016

ToTem: a tool for variant calling pipeline optimization

por Tom, Nikola, Tom, Ondrej, Malcikova, Jitka, Pavlova, Sarka, Kubesova, Blanka, Rausch, Tobias, Kolarik, Miroslav, Benes, Vladimir, Bystry, Vojtech, Pospisilova, Sarka
Publicado 2018

A Simple RNA Target Capture NGS Strategy for Fusion Genes Assessment in the Diagnostics of Pediatric B-cell Acute Lymphoblastic Leukemia

por Grioni, Andrea, Fazio, Grazia, Rigamonti, Silvia, Bystry, Vojtech, Daniele, Giulia, Dostalova, Zuzana, Quadri, Manuel, Saitta, Claudia, Silvestri, Daniela, Songia, Simona, Storlazzi, Clelia T., Biondi, Andrea, Darzentas, Nikos, Cazzaniga, Giovanni
Publicado 2019

High resolution IgH repertoire analysis reveals fetal liver as the likely origin of life-long, innate B lymphopoiesis in humans

por Roy, Anindita, Bystry, Vojtech, Bohn, Georg, Goudevenou, Katerina, Reigl, Tomas, Papaioannou, Maria, Krejci, Adam, O'Byrne, Sorcha, Chaidos, Aristeidis, Grioni, Andrea, Darzentas, Nikos, Roberts, Irene A.G., Karadimitris, Anastasios
Publicado 2017

Radiogenomic markers enable risk stratification and inference of mutational pathway states in head and neck cancer

por Spielvogel, Clemens P., Stoiber, Stefan, Papp, Laszlo, Krajnc, Denis, Grahovac, Marko, Gurnhofer, Elisabeth, Trachtova, Karolina, Bystry, Vojtech, Leisser, Asha, Jank, Bernhard, Schnoell, Julia, Kadletz, Lorenz, Heiduschka, Gregor, Beyer, Thomas, Hacker, Marcus, Kenner, Lukas, Haug, Alexander R.
Publicado 2022

Memory B-cell like chronic lymphocytic leukaemia is associated with specific methylation profile of WNT5A promoter and undetectable expression of WNT5A gene

por Poppova, Lucie, Pavlova, Sarka, Gonzalez, Beatriz, Kotaskova, Jana, Plevova, Karla, Dumbovic, Gabrijela, Janovska, Pavlina, Bystry, Vojtech, Panovska, Anna, Bezdekova, Lucie, Maslejova, Stanislava, Brychtova, Yvona, Doubek, Michael, Krzyzankova, Marcela, Borsky, Marek, Mayer, Jiri, Bryja, Vitezslav, Alonso, Sergio, Pospisilova, Sarka
Publicado 2022

STAT3 and TP53 mutations associate with poor prognosis in anaplastic large cell lymphoma

por Lobello, Cosimo, Tichy, Boris, Bystry, Vojtech, Radova, Lenka, Filip, Daniel, Mraz, Marek, Montes-Mojarro, Ivonne-Aidee, Prokoph, Nina, Larose, Hugo, Liang, Huan-Chang, Sharma, Geeta G., Mologni, Luca, Belada, David, Kamaradova, Katerina, Fend, Falko, Gambacorti-Passerini, Carlo, Merkel, Olaf, Turner, Suzanne D., Janikova, Andrea, Pospisilova, Sarka
Publicado 2020

KMT2C methyltransferase domain regulated INK4A expression suppresses prostate cancer metastasis

por Limberger, Tanja, Schlederer, Michaela, Trachtová, Karolina, Garces de los Fayos Alonso, Ines, Yang, Jiaye, Högler, Sandra, Sternberg, Christina, Bystry, Vojtech, Oppelt, Jan, Tichý, Boris, Schmeidl, Margit, Kodajova, Petra, Jäger, Anton, Neubauer, Heidi A., Oberhuber, Monika, Schmalzbauer, Belinda S., Pospisilova, Sarka, Dolznig, Helmut, Wadsak, Wolfgang, Culig, Zoran, Turner, Suzanne D., Egger, Gerda, Lagger, Sabine, Kenner, Lukas
Publicado 2022

Quality control and quantification in IG/TR next-generation sequencing marker identification: protocols and bioinformatic functionalities by EuroClonality-NGS

por Knecht, Henrik, Reigl, Tomas, Kotrová, Michaela, Appelt, Franziska, Stewart, Peter, Bystry, Vojtech, Krejci, Adam, Grioni, Andrea, Pal, Karol, Stranska, Kamila, Plevova, Karla, Rijntjes, Jos, Songia, Simona, Svatoň, Michael, Froňková, Eva, Bartram, Jack, Scheijen, Blanca, Herrmann, Dietrich, García-Sanz, Ramón, Hancock, Jeremy, Moppett, John, van Dongen, Jacques J. M., Cazzaniga, Giovanni, Davi, Frédéric, Groenen, Patricia J. T. A., Hummel, Michael, Macintyre, Elizabeth A., Stamatopoulos, Kostas, Trka, Jan, Langerak, Anton W., Gonzalez, David, Pott, Christiane, Brüggemann, Monika, Darzentas, Nikos
Publicado 2019

Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NG...

por Brüggemann, Monika, Kotrová, Michaela, Knecht, Henrik, Bartram, Jack, Boudjogrha, Myriam, Bystry, Vojtech, Fazio, Grazia, Froňková, Eva, Giraud, Mathieu, Grioni, Andrea, Hancock, Jeremy, Herrmann, Dietrich, Jiménez, Cristina, Krejci, Adam, Moppett, John, Reigl, Tomas, Salson, Mikael, Scheijen, Blanca, Schwarz, Martin, Songia, Simona, Svaton, Michael, van Dongen, Jacques J. M., Villarese, Patrick, Wakeman, Stephanie, Wright, Gary, Cazzaniga, Giovanni, Davi, Frédéric, García-Sanz, Ramón, Gonzalez, David, Groenen, Patricia J. T. A., Hummel, Michael, Macintyre, Elizabeth A., Stamatopoulos, Kostas, Pott, Christiane, Trka, Jan, Darzentas, Nikos, Langerak, Anton W.
Publicado 2019