Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data

por Sahl, Jason W., Schupp, James M., Rasko, David A., Colman, Rebecca E., Foster, Jeffrey T., Keim, Paul
Publicado 2015

Phylogenetic and genomic diversity in isolates from the globally distributed Acinetobacter baumannii ST25 lineage

por Sahl, Jason W., Del Franco, Mariateresa, Pournaras, Spyros, Colman, Rebecca E., Karah, Nabil, Dijkshoorn, Lenie, Zarrilli, Raffaele
Publicado 2015

In silico evaluation of WHO-endorsed molecular methods to detect drug resistant tuberculosis

por Brankin, Alice, Seifert, Marva, Georghiou, Sophia B., Walker, Timothy M., Uplekar, Swapna, Suresh, Anita, Colman, Rebecca E.
Publicado 2022

Application of Targeted Next-Generation Sequencing Assay on a Portable Sequencing Platform for Culture-Free Detection of Drug-Resistant Tuberculosis from Clinical Samples

por Cabibbe, Andrea M., Spitaleri, Andrea, Battaglia, Simone, Colman, Rebecca E., Suresh, Anita, Uplekar, Swapna, Rodwell, Timothy C., Cirillo, Daniela M.
Publicado 2020

Age and sex distribution of Mycobacterium tuberculosis infection and rifampicin resistance in Myanmar as detected by Xpert MTB/RIF

por Seifert, Marva, Aung, Hlaing Thazin, Besler, Nicole, Harris, Victoria, Mar, Tin Tin, Colman, Rebecca E., Rodwell, Timothy C., Aung, Si Thu
Publicado 2021

Low cost, low tech SNP genotyping tools for resource-limited areas: Plague in Madagascar as a model

por Mitchell, Cedar L., Andrianaivoarimanana, Voahangy, Colman, Rebecca E., Busch, Joseph, Hornstra-O’Neill, Heidie, Keim, Paul S., Wagner, David M., Rajerison, Minoarisoa, Birdsell, Dawn N.
Publicado 2017

No evidence for enzootic plague within black‐tailed prairie dog (Cynomys ludovicianus) populations

por COLMAN, Rebecca E., BRINKERHOFF, R. Jory, BUSCH, Joseph D., RAY, Chris, DOYLE, Adina, SAHL, Jason W., KEIM, Paul, COLLINGE, Sharon K., WAGNER, David M.
Publicado 2021

Designing molecular diagnostics for current tuberculosis drug regimens

por Georghiou, Sophia B., de Vos, Margaretha, Velen, Kavindhran, Miotto, Paolo, Colman, Rebecca E., Cirillo, Daniela Maria, Ismail, Nazir, Rodwell, Timothy C., Suresh, Anita, Ruhwald, Morten
Publicado 2023

Fine-scale Identification of the Most Likely Source of a Human Plague Infection

por Colman, Rebecca E., Vogler, Amy J., Lowell, Jennifer L., Gage, Kenneth L., Morway, Christina, Reynolds, Pamela J., Ettestad, Paul, Keim, Paul, Kosoy, Michael Y., Wagner, David M.
Publicado 2009

Best practices for evaluating single nucleotide variant calling methods for microbial genomics

por Olson, Nathan D., Lund, Steven P., Colman, Rebecca E., Foster, Jeffrey T., Sahl, Jason W., Schupp, James M., Keim, Paul, Morrow, Jayne B., Salit, Marc L., Zook, Justin M.
Publicado 2015

Genomic Characterization of Burkholderia pseudomallei Isolates Selected for Medical Countermeasures Testing: Comparative Genomics Associated with Differential Virulence

por Sahl, Jason W., Allender, Christopher J., Colman, Rebecca E., Califf, Katy J., Schupp, James M., Currie, Bart J., Van Zandt, Kristopher E., Gelhaus, H. Carl, Keim, Paul, Tuanyok, Apichai
Publicado 2015

Rapid Detection of Extensively Drug-Resistant Tuberculosis in Clinical Samples Using a Novel Tabletop Platform: Protocol for a Prospective Clinical Study

por Hillery, Naomi, Seifert, Marva, Catanzaro, Donald G, McKinnon, Symone, Colman, Rebecca E, Chiles, Peter G, Chesov, Dumitru, Ciobanu, Nelly, Hagan, Christopher, Crudu, Valeriu, Catanzaro, Antonino, Rodwell, Timothy C
Publicado 2021

Whole-genome and targeted sequencing of drug-resistant Mycobacterium tuberculosis on the iSeq100 and MiSeq: A performance, ease-of-use, and cost evaluation

por Colman, Rebecca E., Mace, Aurélien, Seifert, Marva, Hetzel, Jonathan, Mshaiel, Haifa, Suresh, Anita, Lemmer, Darrin, Engelthaler, David M., Catanzaro, Donald G., Young, Amanda G., Denkinger, Claudia M., Rodwell, Timothy C.
Publicado 2019

Detecting rifampin and isoniazid resistance in Mycobacterium tuberculosis direct from patient sputum using an automated integrated system

por Colman, Rebecca E., Hagan, Christopher, Chiles, Peter, Seifert, Marva, Catanzaro, Donald G., Kukhtin, Alexander V., Norville, Ryan, Hauns, Laura, Bueno, Arial, Holmberg, Rebecca C., Cooney, Christopher G., Rodwell, Timothy C.
Publicado 2022

Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei

por Hall, Carina M., Busch, Joseph D., Shippy, Kenzie, Allender, Christopher J., Kaestli, Mirjam, Mayo, Mark, Sahl, Jason W., Schupp, James M., Colman, Rebecca E., Keim, Paul, Currie, Bart J., Wagner, David M.
Publicado 2015

Genetic variation at the MHC DRB1 locus is similar across Gunnison's prairie dog (Cynomys gunnisoni) colonies regardless of plague history

por Cobble, Kacy R., Califf, Katy J., Stone, Nathan E., Shuey, Megan M., Birdsell, Dawn N., Colman, Rebecca E., Schupp, James M., Aziz, Maliha, Van Andel, Roger, Rocke, Tonie E., Wagner, David M., Busch, Joseph D.
Publicado 2016

Rapid Drug Susceptibility Testing of Drug-Resistant Mycobacterium tuberculosis Isolates Directly from Clinical Samples by Use of Amplicon Sequencing: a Proof-of-Concept Study

por Colman, Rebecca E., Anderson, Julia, Lemmer, Darrin, Lehmkuhl, Erik, Georghiou, Sophia B., Heaton, Hannah, Wiggins, Kristin, Gillece, John D., Schupp, James M., Catanzaro, Donald G., Crudu, Valeriu, Cohen, Ted, Rodwell, Timothy C., Engelthaler, David M.
Publicado 2016

Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing

por Colman, Rebecca E., Schupp, James M., Hicks, Nathan D., Smith, David E., Buchhagen, Jordan L., Valafar, Faramarz, Crudu, Valeriu, Romancenco, Elena, Noroc, Ecaterina, Jackson, Lynn, Catanzaro, Donald G., Rodwell, Timothy C., Catanzaro, Antonino, Keim, Paul, Engelthaler, David M.
Publicado 2015

Within-Host Evolution of Burkholderia pseudomallei in Four Cases of Acute Melioidosis

por Price, Erin P., Hornstra, Heidie M., Limmathurotsakul, Direk, Max, Tamara L., Sarovich, Derek S., Vogler, Amy J., Dale, Julia L., Ginther, Jennifer L., Leadem, Benjamin, Colman, Rebecca E., Foster, Jeffrey T., Tuanyok, Apichai, Wagner, David M., Peacock, Sharon J., Pearson, Talima, Keim, Paul
Publicado 2010

The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis

por Walker, Timothy M, Miotto, Paolo, Köser, Claudio U, Fowler, Philip W, Knaggs, Jeff, Iqbal, Zamin, Hunt, Martin, Chindelevitch, Leonid, Farhat, Maha R, Cirillo, Daniela Maria, Comas, Iñaki, Posey, James, Omar, Shaheed V, Peto, Timothy EA, Suresh, Anita, Uplekar, Swapna, Laurent, Sacha, Colman, Rebecca E, Nathanson, Carl-Michael, Zignol, Matteo, Walker, Ann Sarah, Crook, Derrick W, Ismail, Nazir, Rodwell, Timothy C
Publicado 2022