Turning over a new leaf in plant genomics

por Caccamo, Mario, Grotewold, Erich
Publicado 2013

Conservation and divergence of gene families encoding components of innate immune response systems in zebrafish

por Stein, Cornelia, Caccamo, Mario, Laird, Gavin, Leptin, Maria
Publicado 2007

PolyMarker: A fast polyploid primer design pipeline

por Ramirez-Gonzalez, Ricardo H., Uauy, Cristobal, Caccamo, Mario
Publicado 2015

Building a successful international research community through data sharing: The case of the Wheat Information System (WheatIS)

por Sen, Taner Z., Caccamo, Mario, Edwards, David, Quesneville, Hadi
Publicado 2020

De novo assembly and genotyping of variants using colored de Bruijn graphs

por Iqbal, Zamin, Caccamo, Mario, Turner, Isaac, Flicek, Paul, McVean, Gil
Publicado 2012

Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments

por Ramirez-Gonzalez, Ricardo H, Bonnal, Raoul, Caccamo, Mario, MacLean, Daniel
Publicado 2012

Eragrostis curvula, a Model Species for Diplosporous Apomixis

por Carballo, Jose, Zappacosta, Diego, Selva, Juan Pablo, Caccamo, Mario, Echenique, Viviana
Publicado 2021

gEVAL — a web-based browser for evaluating genome assemblies

por Chow, William, Brugger, Kim, Caccamo, Mario, Sealy, Ian, Torrance, James, Howe, Kerstin
Publicado 2016

Fruit Development in Sweet Cherry

por Vignati, Edoardo, Lipska, Marzena, Dunwell, Jim M., Caccamo, Mario, Simkin, Andrew J.
Publicado 2022

Options for the generation of seedless cherry, the ultimate snacking product

por Vignati, Edoardo, Lipska, Marzena, Dunwell, Jim M., Caccamo, Mario, Simkin, Andrew J.
Publicado 2022

NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries

por Leggett, Richard M., Clavijo, Bernardo J., Clissold, Leah, Clark, Matthew D., Caccamo, Mario
Publicado 2014

NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles

por Leggett, Richard M., Heavens, Darren, Caccamo, Mario, Clark, Matthew D., Davey, Robert P.
Publicado 2016

Capturing variation in metagenomic assembly graphs with MetaCortex

por Martin, Samuel, Ayling, Martin, Patrono, Livia, Caccamo, Mario, Murcia, Pablo, Leggett, Richard M
Publicado 2023

PyroClean: Denoising Pyrosequences from Protein-Coding Amplicons for the Recovery of Interspecific and Intraspecific Genetic Variation

por Ramirez-Gonzalez, Ricardo, Yu, Douglas W., Bruce, Catharine, Heavens, Darren, Caccamo, Mario, Emerson, Brent C.
Publicado 2013

Primula vulgaris (primrose) genome assembly, annotation and gene expression, with comparative genomics on the heterostyly supergene

por Cocker, Jonathan M., Wright, Jonathan, Li, Jinhong, Swarbreck, David, Dyer, Sarah, Caccamo, Mario, Gilmartin, Philip M.
Publicado 2018

StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics

por Ramirez-Gonzalez, Ricardo H., Leggett, Richard M., Waite, Darren, Thanki, Anil, Drou, Nizar, Caccamo, Mario, Davey, Robert
Publicado 2014

From tetraploid to diploid, a pangenomic approach to identify genes lost during synthetic diploidization of Eragrostis curvula

por Carballo, Jose, Bellido, Andrés Martin, Selva, Juan Pablo, Zappacosta, Diego, Gallo, Cristian Andres, Albertini, Emidio, Caccamo, Mario, Echenique, Viviana
Publicado 2023

Differential Methylation Patterns in Apomictic vs. Sexual Genotypes of the Diplosporous Grass Eragrostis curvula

por Carballo, Jose, Zappacosta, Diego, Marconi, Gianpiero, Gallardo, Jimena, Di Marsico, Marco, Gallo, Cristian A., Caccamo, Mario, Albertini, Emidio, Echenique, Viviana
Publicado 2021

Adaptive Autoimmunity and Foxp3-Based Immunoregulation in Zebrafish

por Quintana, Francisco J., Iglesias, Antonio H., Farez, Mauricio F., Caccamo, Mario, Burns, Evan J., Kassam, Nasim, Oukka, Mohamed, Weiner, Howard L.
Publicado 2010

Tissue-Specific Whole Transcriptome Sequencing in Castor, Directed at Understanding Triacylglycerol Lipid Biosynthetic Pathways

por Brown, Adrian P., Kroon, Johan T. M., Swarbreck, David, Febrer, Melanie, Larson, Tony R., Graham, Ian A., Caccamo, Mario, Slabas, Antoni R.
Publicado 2012