A conversation with ChatGPT on the role of computational systems biology in stem cell research

por Cahan, Patrick, Treutlein, Barbara
Publicado 2023

Integrated genomics of susceptibility to alkylator-induced leukemia in mice

por Cahan, Patrick, Graubert, Timothy A
Publicado 2010

The impact of copy number variation on local gene expression in mouse hematopoietic stem/progenitor cells

por Cahan, Patrick, Li, Yedda, Izumi, Masayo, Graubert, Timothy A.
Publicado 2009

Gene regulation network inference using k-nearest neighbor-based mutual information estimation: revisiting an old DREAM

por Shachaf, Lior I., Roberts, Elijah, Cahan, Patrick, Xiao, Jie
Publicado 2023

A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo

por Spangler, Abby, Su, Emily Y., Craft, April M., Cahan, Patrick
Publicado 2018

Reconstruction of dynamic regulatory networks reveals signaling-induced topology changes associated with germ layer specification

por Su, Emily Y., Spangler, Abby, Bian, Qin, Kasamoto, Jessica Y., Cahan, Patrick
Publicado 2022

RANK(+)TLR2(+) myeloid subpopulation converts autoimmune to joint destruction in rheumatoid arthritis

por Zhang, Weixin, Noller, Kathleen, Crane, Janet, Wan, Mei, Wu, Xiaojun, Cahan, Patrick, Cao, Xu
Publicado 2023

Hepatocyte-like cells derived from human induced pluripotent stem cells using small molecules: implications of a transcriptomic study

por Gao, Xiugong, Li, Rong, Cahan, Patrick, Zhao, Yang, Yourick, Jeffrey J., Sprando, Robert L.
Publicado 2020

Platform-agnostic CellNet enables cross-study analysis of cell fate engineering protocols

por Lo, Emily K.W., Velazquez, Jeremy J., Peng, Da, Kwon, Chulan, Ebrahimkhani, Mo R., Cahan, Patrick
Publicado 2023

POU4F1 is associated with t(8;21) acute myeloid leukemia and contributes directly to its unique transcriptional signature

por Fortier, Julie M., Payton, Jacqueline E., Cahan, Patrick, Ley, Timothy J., Walter, Matthew J., Graubert, Timothy A.
Publicado 2010

Structural Variation of the Mouse Natural Killer Gene Complex

por Higuchi, Darryl A., Cahan, Patrick, Gao, Jian, Ferris, Stephen T., Poursine-Laurent, Jennifer, Graubert, Timothy A., Yokoyama, Wayne M.
Publicado 2010

Sympathetic Innervation Regulates Osteocyte‐Mediated Cortical Bone Resorption during Lactation

por Guo, Qiaoyue, Chen, Ningrong, Qian, Cheng, Qi, Cheng, Noller, Kathleen, Wan, Mei, Liu, Xiaonan, Zhang, Weixin, Cahan, Patrick, Cao, Xu
Publicado 2023

Multi-scale cellular engineering: From molecules to organ-on-a-chip

por Huang, Ngan F., Chaudhuri, Ovijit, Cahan, Patrick, Wang, Aijun, Engler, Adam J., Wang, Yingxiao, Kumar, Sanjay, Khademhosseini, Ali, Li, Song
Publicado 2020

Computational reconstruction of the signalling networks surrounding implanted biomaterials from single-cell transcriptomics

por Cherry, Christopher, Maestas, David R, Han, Jin, Andorko, James I, Cahan, Patrick, Fertig, Elana J, Garmire, Lana X, Elisseeff, Jennifer H
Publicado 2021

Single-Cell Transcriptomic Census of Endothelial Changes Induced by Matrix Stiffness and the Association with Atherosclerosis

por Zamani, Maedeh, Cheng, Yu-Hao, Charbonier, Frank, Gupta, Vivek Kumar, Mayer, Aaron T., Trevino, Alexandro E., Quertermous, Thomas, Chaudhuri, Ovijit, Cahan, Patrick, Huang, Ngan F.
Publicado 2022

wuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data

por Cahan, Patrick, Godfrey, Laura E., Eis, Peggy S., Richmond, Todd A., Selzer, Rebecca R., Brent, Michael, McLeod, Howard L., Ley, Timothy J., Graubert, Timothy A.
Publicado 2008

Involvement of HTLV-I Tax and CREB in aneuploidy: a bioinformatics approach

por de la Fuente, Cynthia, Gupta, Madhur V, Klase, Zachary, Strouss, Katharine, Cahan, Patrick, McCaffery, Timothy, Galante, Anthony, Soteropoulos, Patricia, Pumfery, Anne, Fujii, Masahiro, Kashanchi, Fatah
Publicado 2006

Evaluating the transcriptional fidelity of cancer models

por Peng, Da, Gleyzer, Rachel, Tai, Wen-Hsin, Kumar, Pavithra, Bian, Qin, Isaacs, Bradley, da Rocha, Edroaldo Lummertz, Cai, Stephanie, DiNapoli, Kathleen, Huang, Franklin W., Cahan, Patrick
Publicado 2021

A High-Resolution Map of Segmental DNA Copy Number Variation in the Mouse Genome

por Graubert, Timothy A, Cahan, Patrick, Edwin, Deepa, Selzer, Rebecca R, Richmond, Todd A, Eis, Peggy S, Shannon, William D, Li, Xia, McLeod, Howard L, Cheverud, James M, Ley, Timothy J
Publicado 2007

Engineering Skeletal Muscle Grafts with PAX7::GFP-Sorted Human Pluripotent Stem Cell-Derived Myogenic Progenitors on Fibrin Microfiber Bundles for Tissue Regeneration

por Somers, Sarah M., Gilbert-Honick, Jordana, Choi, In Young, K. W. Lo, Emily, Lim, HoTae, Dias, Shaquielle, Wagner, Kathryn R., Mao, Hai-Quan, Cahan, Patrick, Lee, Gabsang, Grayson, Warren L.
Publicado 2022