Identifying novel transcript biomarkers for hepatocellular carcinoma (HCC) using RNA-Seq datasets and machine learning

por Gupta, Rajinder, Kleinjans, Jos, Caiment, Florian
Publicado 2021

Predicting missing proteomics values using machine learning: Filling the gap using transcriptomics and other biological features

por Ochoteco Asensio, Juan, Verheijen, Marcha, Caiment, Florian
Publicado 2022

High-throughput data integration of RNA–miRNA–circRNA reveals novel insights into mechanisms of benzo[a]pyrene-induced carcinogenicity

por Caiment, Florian, Gaj, Stan, Claessen, Sandra, Kleinjans, Jos
Publicado 2015

FuSe: a tool to move RNA-Seq analyses from chromosomal/gene loci to functional grouping of mRNA transcripts

por Gupta, Rajinder, Schrooders, Yannick, Verheijen, Marcha, Roth, Adrian, Kleinjans, Jos, Caiment, Florian
Publicado 2020

Multi-omics HeCaToS dataset of repeated dose toxicity for cardiotoxic & hepatotoxic compounds

por Verheijen, Marcha, Sarkans, Ugis, Wolski, Witold, Jennen, Danyel, Caiment, Florian, Kleinjans, Jos
Publicado 2022

Quantitative Prediction of Steatosis in Patients with Non-Alcoholic Fatty Liver by Means of Hepatic MicroRNAs Present in Serum and Correlating with Hepatic Fat

por Quintás, Guillermo, Caiment, Florian, Rienda, Iván, Pérez-Rojas, Judith, Pareja, Eugenia, Castell, José V., Jover, Ramiro
Publicado 2022

Investigation of the effects of phthalates on in vitro thyroid models with RNA-Seq and ATAC-Seq

por Nazzari, Marta, Romitti, Mírian, Hauser, Duncan, Carvalho, Daniel J., Giselbrecht, Stefan, Moroni, Lorenzo, Costagliola, Sabine, Caiment, Florian
Publicado 2023

The MicroRNA-based Liquid Biopsy Improves Early Assessment of Lethal Acetaminophen Poisoning: A Case Report

por Krauskopf, Julian, Gosink, Mark M., Schomaker, Shelli, Caiment, Florian, Warner, Roscoe, Johnson, Kent, Kleinjans, Jos, Aubrecht, Jiri
Publicado 2020

Acrylamide alters CREB and retinoic acid signalling pathways during differentiation of the human neuroblastoma SH-SY5Y cell line

por Attoff, Kristina, Johansson, Ylva, Cediel-Ulloa, Andrea, Lundqvist, Jessica, Gupta, Rajinder, Caiment, Florian, Gliga, Anda, Forsby, Anna
Publicado 2020

CODA: a combo-Seq data analysis workflow

por Nazzari, Marta, Hauser, Duncan, van Herwijnen, Marcel, Romitti, Mírian, Carvalho, Daniel J, Kip, Anna M, Caiment, Florian
Publicado 2022

IsoTools: a flexible workflow for long-read transcriptome sequencing analysis

por Lienhard, Matthias, van den Beucken, Twan, Timmermann, Bernd, Hochradel, Myriam, Börno, Stefan, Caiment, Florian, Vingron, Martin, Herwig, Ralf
Publicado 2023

High-throughput sequencing reveals novel microRNAs in the Bovine Leukemia Virus (BLV)-induced ovine model of leukemia

por Rosewick, Nicolas, dehouck, Céline, Cleuter, Yvette, Caiment, Florian, Georges, Michel, Martiat, Philippe, Burny, Arsène, Van den Broeke, Anne
Publicado 2011

RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database

por Bushel, Pierre R., Caiment, Florian, Wu, Han, O’Lone, Raegan, Day, Frank, Calley, John, Smith, Aaron, Li, Jianying
Publicado 2018

Analysis of cell-specific transcriptional responses in human colon tissue using CIBERSORTx

por He, Yueqin, De Benedictis, Julia Nicole, Caiment, Florian, van Breda, Simone G. J., de Kok, Theo M. C. M.
Publicado 2023

Acetaminophen Overdose as a Potential Risk Factor for Parkinson's Disease

por Bohler, Sacha, Liu, Xiaosong, Krauskopf, Julian, Caiment, Florian, Aubrecht, Jiri, Nicolaes, Gerry A. F., Kleinjans, Jos C. S., Briedé, Jacco J.
Publicado 2019

Nuclear and Mitochondrial DNA Methylation Patterns Induced by Valproic Acid in Human Hepatocytes

por Wolters, Jarno E. J., van Breda, Simone G. J., Caiment, Florian, Claessen, Sandra M., de Kok, Theo M. C. M., Kleinjans, Jos C. S.
Publicado 2017

Serum microRNA signatures as "liquid biopsies" for interrogating hepatotoxic mechanisms and liver pathogenesis in human

por Krauskopf, Julian, de Kok, Theo M., Schomaker, Shelli J., Gosink, Mark, Burt, Deborah A., Chandler, Patricia, Warner, Roscoe L., Johnson, Kent J., Caiment, Florian, Kleinjans, Jos C., Aubrecht, Jiri
Publicado 2017

The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic t...

por Smith, Aaron, Calley, John, Mathur, Sachin, Qian, Hui-Rong, Wu, Han, Farmen, Mark, Caiment, Florian, Bushel, Pierre R., Li, Jianying, Fisher, Craig, Kirby, Patrick, Koenig, Erik, Hall, David G., Watson, David E
Publicado 2016

Hepatic Steatosis Contributes to the Development of Muscle Atrophy via Inter-Organ Crosstalk

por Pasmans, Kenneth, Adriaens, Michiel E., Olinga, Peter, Langen, Ramon, Rensen, Sander S., Schaap, Frank G., Olde Damink, Steven W. M., Caiment, Florian, van Loon, Luc J. C., Blaak, Ellen E., Meex, Ruth C. R.
Publicado 2021

Generation and characterization of iPSC-derived renal proximal tubule-like cells with extended stability

por Chandrasekaran, Vidya, Carta, Giada, da Costa Pereira, Daniel, Gupta, Rajinder, Murphy, Cormac, Feifel, Elisabeth, Kern, Georg, Lechner, Judith, Cavallo, Anna Lina, Gupta, Shailesh, Caiment, Florian, Kleinjans, Jos C. S., Gstraunthaler, Gerhard, Jennings, Paul, Wilmes, Anja
Publicado 2021