Reporter pathway analysis from transcriptome data: Metabolite-centric versus Reaction-centric approach

por Çakır, Tunahan
Publicado 2015

Reconstructed Metabolic Network Models Predict Flux-Level Metabolic Reprogramming in Glioblastoma

por Özcan, Emrah, Çakır, Tunahan
Publicado 2016

Working together

por Odongo, Regan, Çakır, Tunahan
Publicado 2021

Metabolic Network Discovery by Top-Down and Bottom-Up Approaches and Paths for Reconciliation

por Çakır, Tunahan, Khatibipour, Mohammad Jafar
Publicado 2014

Sparsity as Cellular Objective to Infer Directed Metabolic Networks from Steady-State Metabolome Data: A Theoretical Analysis

por Öksüz, Melik, Sadıkoğlu, Hasan, Çakır, Tunahan
Publicado 2013

Systematic analysis of transcription-level effects of neurodegenerative diseases on human brain metabolism by a newly reconstructed brain-specific metabolic network

por Sertbaş, Mustafa, Ülgen, Kutlu, Çakır, Tunahan
Publicado 2014

Editorial: Computational Systems Biology of Pathogen-Host Interactions

por Durmuş, Saliha, Çakır, Tunahan, Guthke, Reinhard
Publicado 2016

JacLy: a Jacobian-based method for the inference of metabolic interactions from the covariance of steady-state metabolome data

por Khatibipour, Mohammad Jafar, Kurtoğlu, Furkan, Çakır, Tunahan
Publicado 2018

A systems pharmacology approach based on oncogenic signalling pathways to determine the mechanisms of action of natural products in breast cancer from transcriptome data

por Odongo, Regan, Demiroglu-Zergeroglu, Asuman, Çakır, Tunahan
Publicado 2021

Genome-Wide Analysis of Yeast Metabolic Cycle through Metabolic Network Models Reveals Superiority of Integrated ATAC-seq Data over RNA-seq Data

por Cesur, Müberra Fatma, Çakır, Tunahan, Pir, Pınar
Publicado 2022

Infection Strategies of Bacterial and Viral Pathogens through Pathogen–Human Protein–Protein Interactions

por Durmuş Tekir, Saliha, Çakir, Tunahan, Ülgen, Kutlu Ö
Publicado 2012

A review on computational systems biology of pathogen–host interactions

por Durmuş, Saliha, Çakır, Tunahan, Özgür, Arzucan, Guthke, Reinhard
Publicado 2015

Novel Approaches for Systems Biology of Metabolism-Oriented Pathogen-Human Interactions: A Mini-Review

por Çakır, Tunahan, Panagiotou, Gianni, Uddin, Reaz, Durmuş, Saliha
Publicado 2020

Dual transcriptome based reconstruction of Salmonella-human integrated metabolic network to screen potential drug targets

por Kocabaş, Kadir, Arif, Alina, Uddin, Reaz, Çakır, Tunahan
Publicado 2022

Effect of iron and magnesium addition on population dynamics and high value product of microalgae grown in anaerobic liquid digestate

por Ermis, Hande, Guven-Gulhan, Unzile, Cakir, Tunahan, Altinbas, Mahmut
Publicado 2020

Author Correction: Effect of iron and magnesium addition on population dynamics and high value product of microalgae grown in anaerobic liquid digestate

por Ermis, Hande, Guven-Gulhan, Unzile, Cakir, Tunahan, Altinbas, Mahmut
Publicado 2020

A new metabolic model of Drosophila melanogaster and the integrative analysis of Parkinson’s disease

por Cesur, Müberra Fatma, Basile, Arianna, Patil, Kiran Raosaheb, Çakır, Tunahan
Publicado 2023

Network-Based Metabolism-Centered Screening of Potential Drug Targets in Klebsiella pneumoniae at Genome Scale

por Cesur, Müberra Fatma, Siraj, Bushra, Uddin, Reaz, Durmuş, Saliha, Çakır, Tunahan
Publicado 2020

Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae

por Çakır, Tunahan, Kırdar, Betül, Önsan, Z İlsen, Ülgen, Kutlu Ö, Nielsen, Jens
Publicado 2007

Transcriptional landscape of cellular networks reveal interactions driving the dormancy mechanisms in cancer

por Uzuner, Dilara, Akkoç, Yunus, Peker, Nesibe, Pir, Pınar, Gözüaçık, Devrim, Çakır, Tunahan
Publicado 2021