Draft Genome Sequence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Strain from a Returned Traveler from Pakistan

por Hao, Samantha, Veuthey, Tess, Caldera, Saharai, Serpa, Paula Hayakawa, Haller, Barbara, Tan, Michelle, Neff, Norma, Madera, Sharline, Langelier, Charles
Publicado 2020

Microbiome and Antimicrobial Resistance Gene Dynamics in International Travelers

por Langelier, Charles, Graves, Michael, Kalantar, Katrina, Caldera, Saharai, Durrant, Robert, Fisher, Mark, Backman, Richard, Tanner, Windy, DeRisi, Joseph L., Leung, Daniel T.
Publicado 2019

Aerosolized nicotine from e-cigarettes alters gene expression, increases lung protein permeability, and impairs viral clearance in murine influenza infection

por Maishan, Mazharul, Sarma, Aartik, Chun, Lauren F., Caldera, Saharai, Fang, Xiaohui, Abbott, Jason, Christenson, Stephanie A., Langelier, Charles R., Calfee, Carolyn S., Gotts, Jeffrey E., Matthay, Michael A.
Publicado 2023

Index cases first identified by nasal-swab rapid COVID-19 tests had more transmission to household contacts than cases identified by other test types

por Ji, Jenny, Viloria Winnett, Alexander, Shelby, Natasha, Reyes, Jessica A., Schlenker, Noah W., Davich, Hannah, Caldera, Saharai, Tognazzini, Colten, Goh, Ying-Ying, Feaster, Matt, Ismagilov, Rustem F.
Publicado 2023

The sputum transcriptome better predicts COPD exacerbations after the withdrawal of inhaled corticosteroids than sputum eosinophils

por Ditz, Benedikt, Sarma, Aartik, Kerstjens, Huib A.M., Liesker, Jeroen J.W., Bathoorn, Erik, Vonk, Judith M., Bernal, Victor, Horvatovich, Peter, Guryev, Victor, Caldera, Saharai, Langelier, Chaz, Faiz, Alen, Christenson, Stephanie A., van den Berge, Maarten
Publicado 2021

Cystic Fibrosis Lung Transplant Recipients Have Suppressed Airway Interferon Responses during Pseudomonas Infection

por Dugger, Daniel T., Fung, Monica, Zlock, Lorna, Caldera, Saharai, Sharp, Louis, Hays, Steven R., Singer, Jonathan P., Leard, Lorriana E., Golden, Jefferey A., Shah, Rupal J., Kukreja, Jasleen, Gordon, Erin, Finkbeiner, Walter, Kleinhenz, Mary Ellen, Langelier, Chaz, Greenland, John R.
Publicado 2020

Extreme differences in SARS-CoV-2 viral loads among respiratory specimen types during presumed pre-infectious and infectious periods

por Viloria Winnett, Alexander, Akana, Reid, Shelby, Natasha, Davich, Hannah, Caldera, Saharai, Yamada, Taikun, Reyna, John Raymond B, Romano, Anna E, Carter, Alyssa M, Kim, Mi Kyung, Thomson, Matt, Tognazzini, Colten, Feaster, Matthew, Goh, Ying-Ying, Chew, Yap Ching, Ismagilov, Rustem F
Publicado 2023

Daily SARS-CoV-2 Nasal Antigen Tests Miss Infected and Presumably Infectious People Due to Viral Load Differences among Specimen Types

por Viloria Winnett, Alexander, Akana, Reid, Shelby, Natasha, Davich, Hannah, Caldera, Saharai, Yamada, Taikun, Reyna, John Raymond B., Romano, Anna E., Carter, Alyssa M., Kim, Mi Kyung, Thomson, Matt, Tognazzini, Colten, Feaster, Matthew, Goh, Ying-Ying, Chew, Yap Ching, Ismagilov, Rustem F.
Publicado 2023

Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections

por Serpa, Paula Hayakawa, Deng, Xianding, Abdelghany, Mazin, Crawford, Emily, Malcolm, Katherine, Caldera, Saharai, Fung, Monica, McGeever, Aaron, Kalantar, Katrina L., Lyden, Amy, Ghale, Rajani, Deiss, Thomas, Neff, Norma, Miller, Steven A., Doernberg, Sarah B., Chiu, Charles Y., DeRisi, Joseph L., Calfee, Carolyn S., Langelier, Charles R.
Publicado 2022

Upper airway gene expression reveals a more robust innate and adaptive immune response to SARS-CoV-2 in children compared with older adults

por Mick, Eran, Tsitsiklis, Alexandra, Spottiswoode, Natasha, Caldera, Saharai, Serpa, Paula Hayakawa, Detweiler, Angela M., Neff, Norma, Pisco, Angela Oliveira, Li, Lucy M., Retallack, Hanna, Ratnasiri, Kalani, Williamson, Kayla M., Soesanto, Victoria, Simões, Eric A. F., Kistler, Amy, Wagner, Brandie D., DeRisi, Joseph L., Ambroggio, Lilliam, Mourani, Peter M., Langelier, Charles R.
Publicado 2021

Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children

por Mick, Eran, Tsitsiklis, Alexandra, Kamm, Jack, Kalantar, Katrina L., Caldera, Saharai, Lyden, Amy, Tan, Michelle, Detweiler, Angela M., Neff, Norma, Osborne, Christina M., Williamson, Kayla M., Soesanto, Victoria, Leroue, Matthew, Maddux, Aline B., Simões, Eric A.F., Carpenter, Todd C., Wagner, Brandie D., DeRisi, Joseph L., Ambroggio, Lilliam, Mourani, Peter M., Langelier, Charles R.
Publicado 2023

Investigating Transfusion-related Sepsis Using Culture-Independent Metagenomic Sequencing

por Crawford, Emily, Kamm, Jack, Miller, Steve, Li, Lucy M, Caldera, Saharai, Lyden, Amy, Yokoe, Deborah, Nichols, Amy, Tran, Nam K, Barnard, Sarah E, Conner, Peter M, Nambiar, Ashok, Zinter, Matt S, Moayeri, Morvarid, Serpa, Paula Hayakawa, Prince, Brian C, Quan, Jenai, Sit, Rene, Tan, Michelle, Phelps, Maira, Derisi, Joseph L, Tato, Cristina M, Langelier, Charles
Publicado 2020

Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children

por Mick, Eran, Tsitsiklis, Alexandra, Spottiswoode, Natasha, Caldera, Saharai, Serpa, Paula Hayakawa, Detweiler, Angela M., Neff, Norma, Pisco, Angela Oliveira, Li, Lucy M., Retallack, Hanna, Ratnasiri, Kalani, Williamson, Kayla M., Soesanto, Victoria, Simões, Eric A. F., Smith, Christiana, Abuogi, Lisa, Kistler, Amy, Wagner, Brandie D., DeRisi, Joseph L., Ambroggio, Lilliam, Mourani, Peter M., Langelier, Charles R.
Publicado 2022

Integrated host-microbe plasma metagenomics for sepsis diagnosis in a prospective cohort of critically ill adults

por Kalantar, Katrina L., Neyton, Lucile, Abdelghany, Mazin, Mick, Eran, Jauregui, Alejandra, Caldera, Saharai, Serpa, Paula Hayakawa, Ghale, Rajani, Albright, Jack, Sarma, Aartik, Tsitsiklis, Alexandra, Leligdowicz, Aleksandra, Christenson, Stephanie A., Liu, Kathleen, Kangelaris, Kirsten N., Hendrickson, Carolyn, Sinha, Pratik, Gomez, Antonio, Neff, Norma, Pisco, Angela, Doernberg, Sarah B., Derisi, Joseph L., Matthay, Michael A., Calfee, Carolyn S., Langelier, Charles R.
Publicado 2022

Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults

por Langelier, Charles, Kalantar, Katrina L., Moazed, Farzad, Wilson, Michael R., Crawford, Emily D., Deiss, Thomas, Belzer, Annika, Bolourchi, Samaneh, Caldera, Saharai, Fung, Monica, Jauregui, Alejandra, Malcolm, Katherine, Lyden, Amy, Khan, Lillian, Vessel, Kathryn, Quan, Jenai, Zinter, Matt, Chiu, Charles Y., Chow, Eric D., Wilson, Jenny, Miller, Steve, Matthay, Michael A., Pollard, Katherine S., Christenson, Stephanie, Calfee, Carolyn S., DeRisi, Joseph L.
Publicado 2018

FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences

por Quan, Jenai, Langelier, Charles, Kuchta, Alison, Batson, Joshua, Teyssier, Noam, Lyden, Amy, Caldera, Saharai, McGeever, Aaron, Dimitrov, Boris, King, Ryan, Wilheim, Jordan, Murphy, Maxwell, Ares, Lara Pesce, Travisano, Katherine A, Sit, Rene, Amato, Roberto, Mumbengegwi, Davis R, Smith, Jennifer L, Bennett, Adam, Gosling, Roly, Mourani, Peter M, Calfee, Carolyn S, Neff, Norma F, Chow, Eric D, Kim, Peter S, Greenhouse, Bryan, DeRisi, Joseph L, Crawford, Emily D
Publicado 2019

Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics

por Tsitsiklis, Alexandra, Osborne, Christina M, Kamm, Jack, Williamson, Kayla, Kalantar, Katrina, Dudas, Gytis, Caldera, Saharai, Lyden, Amy, Tan, Michelle, Neff, Norma, Soesanto, Victoria, Harris, J Kirk, Ambroggio, Lilliam, Maddux, Aline B, Carpenter, Todd C, Reeder, Ron W, Locandro, Chris, Simões, Eric A F, Leroue, Matthew K, Hall, Mark W, Zuppa, Athena F, Carcillo, Joseph, Meert, Kathleen L, Sapru, Anil, Pollack, Murray M, McQuillen, Patrick S, Notterman, Daniel A, Dean, J Michael, Zinter, Matt S, Wagner, Brandie D, DeRisi, Joseph L, Mourani, Peter M, Langelier, Charles R
Publicado 2022

Rapid deployment of SARS-CoV-2 testing: The CLIAHUB

por Crawford, Emily D., Acosta, Irene, Ahyong, Vida, Anderson, Erika C., Arevalo, Shaun, Asarnow, Daniel, Axelrod, Shannon, Ayscue, Patrick, Azimi, Camillia S., Azumaya, Caleigh M., Bachl, Stefanie, Bachmutsky, Iris, Bhaduri, Aparna, Brown, Jeremy Bancroft, Batson, Joshua, Behnert, Astrid, Boileau, Ryan M., Bollam, Saumya R., Bonny, Alain R., Booth, David, Borja, Michael Jerico B., Brown, David, Buie, Bryan, Burnett, Cassandra E., Byrnes, Lauren E., Cabral, Katelyn A., Cabrera, Joana P., Caldera, Saharai, Canales, Gabriela, Castañeda, Gloria R., Chan, Agnes Protacio, Chang, Christopher R., Charles-Orszag, Arthur, Cheung, Carly, Chio, Unseng, Chow, Eric D., Citron, Y. Rose, Cohen, Allison, Cohn, Lillian B., Chiu, Charles, Cole, Mitchel A., Conrad, Daniel N., Constantino, Angela, Cote, Andrew, Crayton-Hall, Tre’Jon, Darmanis, Spyros, Detweiler, Angela M., Dial, Rebekah L., Dong, Shen, Duarte, Elias M., Dynerman, David, Egger, Rebecca, Fanton, Alison, Frumm, Stacey M., Fu, Becky Xu Hua, Garcia, Valentina E., Garcia, Julie, Gladkova, Christina, Goldman, Miriam, Gomez-Sjoberg, Rafael, Gordon, M. Grace, Grove, James C. R., Gupta, Shweta, Haddjeri-Hopkins, Alexis, Hadley, Pierce, Haliburton, John, Hao, Samantha L., Hartoularos, George, Herrera, Nadia, Hilberg, Melissa, Ho, Kit Ying E., Hoppe, Nicholas, Hosseinzadeh, Shayan, Howard, Conor J., Hussmann, Jeffrey A., Hwang, Elizabeth, Ingebrigtsen, Danielle, Jackson, Julia R., Jowhar, Ziad M., Kain, Danielle, Kim, James Y. S., Kistler, Amy, Kreutzfeld, Oriana, Kulsuptrakul, Jessie, Kung, Andrew F., Langelier, Charles, Laurie, Matthew T., Lee, Lena, Leng, Kun, Leon, Kristoffer E., Leonetti, Manuel D., Levan, Sophia R., Li, Sam, Li, Aileen W., Liu, Jamin, Lubin, Heidi S., Lyden, Amy, Mann, Jennifer, Mann, Sabrina, Margulis, Gorica, Marquez, Diana M., Marsh, Bryan P., Martyn, Calla, McCarthy, Elizabeth E., McGeever, Aaron, Merriman, Alexander F., Meyer, Lauren K., Miller, Steve, Moore, Megan K., Mowery, Cody T., Mukhtar, Tanzila, Mwakibete, Lusajo L., Narez, Noelle, Neff, Norma F., Osso, Lindsay A., Oviedo, Diter, Peng, Suping, Phelps, Maira, Phong, Kiet, Picard, Peter, Pieper, Lindsey M., Pincha, Neha, Pisco, Angela Oliveira, Pogson, Angela, Pourmal, Sergei, Puccinelli, Robert R., Puschnik, Andreas S., Rackaityte, Elze, Raghavan, Preethi, Raghavan, Madhura, Reese, James, Replogle, Joseph M., Retallack, Hanna, Reyes, Helen, Rose, Donald, Rosenberg, Marci F., Sanchez-Guerrero, Estella, Sattler, Sydney M., Savy, Laura, See, Stephanie K., Sellers, Kristin K., Serpa, Paula Hayakawa, Sheehy, Maureen, Sheu, Jonathan, Silas, Sukrit, Streithorst, Jessica A., Strickland, Jack, Stryke, Doug, Sunshine, Sara, Suslow, Peter, Sutanto, Renaldo, Tamura, Serena, Tan, Michelle, Tan, Jiongyi, Tang, Alice, Tato, Cristina M., Taylor, Jack C., Tenvooren, Iliana, Thompson, Erin M., Thornborrow, Edward C., Tse, Eric, Tung, Tony, Turner, Marc L., Turner, Victoria S., Turnham, Rigney E., Turocy, Mary J., Vaidyanathan, Trisha V., Vainchtein, Ilia D., Vanaerschot, Manu, Vazquez, Sara E., Wandler, Anica M., Wapniarski, Anne, Webber, James T., Weinberg, Zara Y., Westbrook, Alexandra, Wong, Allison W., Wong, Emily, Worthington, Gajus, Xie, Fang, Xu, Albert, Yamamoto, Terrina, Yang, Ying, Yarza, Fauna, Zaltsman, Yefim, Zheng, Tina, DeRisi, Joseph L.
Publicado 2020