In Nature, There Is Only Diversity

por McLaren, Michael R., Callahan, Benjamin J.
Publicado 2018

Pathogen resistance may be the principal evolutionary advantage provided by the microbiome

por McLaren, Michael R., Callahan, Benjamin J.
Publicado 2020

Serovar-level Identification of Bacterial Foodborne Pathogens From Full-length 16S rRNA Gene Sequencing

por Grinevich, Dmitry, Harden, Lyndy, Thakur, Siddhartha, Callahan, Benjamin J
Publicado 2023

Evaluation of fecal Lactobacillus populations in dogs with idiopathic epilepsy: a pilot study

por Muñana, Karen R., Jacob, Megan E., Callahan, Benjamin J.
Publicado 2020

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

por Callahan, Benjamin J, McMurdie, Paul J, Holmes, Susan P
Publicado 2017

Consistent and correctable bias in metagenomic sequencing experiments

por McLaren, Michael R, Willis, Amy D, Callahan, Benjamin J
Publicado 2019

Denoising PCR-amplified metagenome data

por Rosen, Michael J, Callahan, Benjamin J, Fisher, Daniel S, Holmes, Susan P
Publicado 2012

Correlated Evolution of Nearby Residues in Drosophilid Proteins

por Callahan, Benjamin, Neher, Richard A., Bachtrog, Doris, Andolfatto, Peter, Shraiman, Boris I.
Publicado 2011

Ultra-accurate microbial amplicon sequencing with synthetic long reads

por Callahan, Benjamin J., Grinevich, Dmitry, Thakur, Siddhartha, Balamotis, Michael A., Yehezkel, Tuval Ben
Publicado 2021

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

por Davis, Nicole M., Proctor, Diana M., Holmes, Susan P., Relman, David A., Callahan, Benjamin J.
Publicado 2018

Identification of microbial taxa present in Ctenocephalides felis (cat flea) reveals widespread co-infection and associations with vector phylogeny

por Manvell, Charlotte, Berman, Hanna, Callahan, Benjamin, Breitschwerdt, Edward, Swain, William, Ferris, Kelli, Maggi, Ricardo, Lashnits, Erin
Publicado 2022

Phylogeny-guided microbiome OTU-specific association test (POST)

por Huang, Caizhi, Callahan, Benjamin J., Wu, Michael C., Holloway, Shannon T., Brochu, Hayden, Lu, Wenbin, Peng, Xinxia, Tzeng, Jung-Ying
Publicado 2022

DADA2: High resolution sample inference from Illumina amplicon data

por Callahan, Benjamin J, McMurdie, Paul J, Rosen, Michael J, Han, Andrew W, Johnson, Amy Jo A, Holmes, Susan P
Publicado 2016

Dosing Regimen of Enrofloxacin Impacts Intestinal Pharmacokinetics and the Fecal Microbiota in Steers

por Ferguson, Kaitlyn M., Jacob, Megan E., Theriot, Casey M., Callahan, Benjamin J., Prange, Timo, Papich, Mark G., Foster, Derek M.
Publicado 2018

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution

por Callahan, Benjamin J, Wong, Joan, Heiner, Cheryl, Oh, Steve, Theriot, Casey M, Gulati, Ajay S, McGill, Sarah K, Dougherty, Michael K
Publicado 2019

Meta-analysis reveals the vaginal microbiome is a better predictor of earlier than later preterm birth

por Huang, Caizhi, Gin, Craig, Fettweis, Jennifer, Foxman, Betsy, Gelaye, Bizu, MacIntyre, David A., Subramaniam, Akila, Fraser, William, Tabatabaei, Negar, Callahan, Benjamin
Publicado 2023

Microbiome analysis of bile from apparently healthy cats and cats with suspected hepatobiliary disease

por Slead, Tanner S., Callahan, Benjamin J., Schreeg, Megan E., Seiler, Gabriela S., Stowe, Devorah M., Azcarate‐Peril, Maria Andrea, Jacob, Megan E., Gookin, Jody L.
Publicado 2023

Ceftiofur formulation differentially affects the intestinal drug concentration, resistance of fecal Escherichia coli, and the microbiome of steers

por Foster, Derek M., Jacob, Megan E., Farmer, Kyle A., Callahan, Benjamin J., Theriot, Casey M., Kathariou, Sophia, Cernicchiaro, Natalia, Prange, Timo, Papich, Mark G.
Publicado 2019

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea

por Bik, Elisabeth M., Costello, Elizabeth K., Switzer, Alexandra D., Callahan, Benjamin J., Holmes, Susan P., Wells, Randall S., Carlin, Kevin P., Jensen, Eric D., Venn-Watson, Stephanie, Relman, David A.
Publicado 2016

Evaluation of SARS-CoV-2 identification methods through surveillance of companion animals in SARS-CoV-2-positive homes in North Carolina, March to December 2020

por Gin, Taylor E., Petzold, Elizabeth A., Uthappa, Diya M., Neighbors, Coralei E., Borough, Anna R., Gin, Craig, Lashnits, Erin, Sempowski, Gregory D., Denny, Thomas, Bienzle, Dorothee, Weese, J. Scott, Callahan, Benjamin J., Woods, Christopher W.
Publicado 2023