Relating perturbation magnitude to temporal gene expression in biological systems

por Callister, Stephen J, Parnell, J Jacob, Pfrender, Michael E, Hashsham, Syed A
Publicado 2009

An Empirical Strategy for Characterizing Bacterial Proteomes across Species in the Absence of Genomic Sequences

por Turse, Joshua E., Marshall, Matthew J., Fredrickson, James K., Lipton, Mary S., Callister, Stephen J.
Publicado 2010

Comparative Proteomic Analysis of Desulfotomaculum reducens MI-1: Insights into the Metabolic Versatility of a Gram-Positive Sulfate- and Metal-Reducing Bacterium

por Otwell, Anne E., Callister, Stephen J., Zink, Erika M., Smith, Richard D., Richardson, Ruth E.
Publicado 2016

Time-course analysis of the Shewanella amazonensis SB2B proteome in response to sodium chloride shock

por Parnell, J. Jacob, Callister, Stephen J., Rompato, Giovanni, Nicora, Carrie D., Paša-Tolić, Ljiljana, Williamson, Ashley, Pfrender, Michael E.
Publicado 2011

Evaluating Models of Cellulose Degradation by Fibrobacter succinogenes S85

por Burnet, Meagan C., Dohnalkova, Alice C., Neumann, Anthony P., Lipton, Mary S., Smith, Richard D., Suen, Garret, Callister, Stephen J.
Publicado 2015

Gene co-expression network analysis in Rhodobacter capsulatus and application to comparative expression analysis of Rhodobacter sphaeroides

por Peña-Castillo, Lourdes, Mercer, Ryan G, Gurinovich, Anastasia, Callister, Stephen J, Wright, Aaron T, Westbye, Alexander B, Beatty, J Thomas, Lang, Andrew S
Publicado 2014

Development of a biomarker for Geobacter activity and strain composition; Proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI)

por Wilkins, Michael J., Callister, Stephen J., Miletto, Marzia, Williams, Kenneth H., Nicora, Carrie D., Lovley, Derek R., Long, Philip E., Lipton, Mary S.
Publicado 2011

Identification of metabolite and protein explanatory variables governing microbiome establishment and re-establishment within a cellulose-degrading anaerobic bioreactor

por Callister, Stephen J., McCue, Lee Ann, Boaro, Amy A., LaMarche, Brian, White, Richard A., Brown, Joseph M., Ahring, Birgitte K.
Publicado 2018

Comparative Bacterial Proteomics: Analysis of the Core Genome Concept

por Callister, Stephen J., McCue, Lee Ann, Turse, Joshua E., Monroe, Matthew E., Auberry, Kenneth J., Smith, Richard D., Adkins, Joshua N., Lipton, Mary S.
Publicado 2008

Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode

por Lin, Fan, Williams, Brad J., Thangella, Padmavathi A. V., Ladak, Adam, Schepmoes, Athena A., Olivos, Hernando J., Zhao, Kangmei, Callister, Stephen J., Bartley, Laura E.
Publicado 2017

Indexing Permafrost Soil Organic Matter Degradation Using High-Resolution Mass Spectrometry

por Mann, Benjamin F., Chen, Hongmei, Herndon, Elizabeth M., Chu, Rosalie K., Tolic, Nikola, Portier, Evan F., Roy Chowdhury, Taniya, Robinson, Errol W., Callister, Stephen J., Wullschleger, Stan D., Graham, David E., Liang, Liyuan, Gu, Baohua
Publicado 2015

Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla

por Waltman, Peter H., Guo, Jian, Reistetter, Emily Nahas, Purvine, Samuel, Ansong, Charles K., van Baren, Marijke J., Wong, Chee-Hong, Wei, Chia-Lin, Smith, Richard D., Callister, Stephen J., Stuart, Joshua M., Worden, Alexandra Z.
Publicado 2016

MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis

por LaMarche, Brian L, Crowell, Kevin L, Jaitly, Navdeep, Petyuk, Vladislav A, Shah, Anuj R, Polpitiya, Ashoka D, Sandoval, John D, Kiebel, Gary R, Monroe, Matthew E, Callister, Stephen J, Metz, Thomas O, Anderson, Gordon A, Smith, Richard D
Publicado 2013

Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants

por van Baren, Marijke J., Bachy, Charles, Reistetter, Emily Nahas, Purvine, Samuel O., Grimwood, Jane, Sudek, Sebastian, Yu, Hang, Poirier, Camille, Deerinck, Thomas J., Kuo, Alan, Grigoriev, Igor V., Wong, Chee-Hong, Smith, Richard D., Callister, Stephen J., Wei, Chia-Lin, Schmutz, Jeremy, Worden, Alexandra Z.
Publicado 2016

Deciphering the microbial and molecular responses of geographically diverse Setaria accessions grown in a nutrient-poor soil

por Peterson, Matthew J., Handakumbura, Pubudu P., Thompson, Allison M., Russell, Zachary R., Kim, Young-Mo, Fansler, Sarah J., Smith, Montana L., Toyoda, Jason G., Chu, Rosey K., Stanfill, Bryan A., Fransen, Steven C., Bailey, Vanessa L., Jansson, Christer, Hixson, Kim K., Callister, Stephen J.
Publicado 2021

Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations

por Roy Chowdhury, Taniya, Lee, Joon-Yong, Bottos, Eric M., Brislawn, Colin J., White, Richard Allen, Bramer, Lisa M., Brown, Joseph, Zucker, Jeremy D., Kim, Young-Mo, Jumpponen, Ari, Rice, Charles W., Fansler, Sarah J., Metz, Thomas O., McCue, Lee Ann, Callister, Stephen J., Song, Hyun-Seob, Jansson, Janet K.
Publicado 2019