NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

por Calus, Szymon T, Ijaz, Umer Z, Pinto, Ameet J
Publicado 2018

Staphylococcal species heterogeneity in the nasal microbiome following antibiotic prophylaxis revealed by tuf gene deep sequencing

por McMurray, Claire L., Hardy, Katherine J., Calus, Szymon T., Loman, Nicholas J., Hawkey, Peter M.
Publicado 2016

The effect of DNA extraction methodology on gut microbiota research applications

por Gerasimidis, Konstantinos, Bertz, Martin, Quince, Christopher, Brunner, Katja, Bruce, Alanna, Combet, Emilie, Calus, Szymon, Loman, Nick, Ijaz, Umer Zeeshan
Publicado 2016

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

por Salter, Susannah J, Cox, Michael J, Turek, Elena M, Calus, Szymon T, Cookson, William O, Moffatt, Miriam F, Turner, Paul, Parkhill, Julian, Loman, Nicholas J, Walker, Alan W
Publicado 2014

The distinct features of microbial ‘dysbiosis’ of Crohn’s disease do not occur to the same extent in their unaffected, genetically-linked kindred

por Ijaz, Umer Zeeshan, Quince, Christopher, Hanske, Laura, Loman, Nick, Calus, Szymon T., Bertz, Martin, Edwards, Christine A., Gaya, Daniel R., Hansen, Richard, McGrogan, Paraic, Russell, Richard K., Gerasimidis, Konstantinos
Publicado 2017

Mycobacterial Dihydrofolate Reductase Inhibitors Identified Using Chemogenomic Methods and In Vitro Validation

por Mugumbate, Grace, Abrahams, Katherine A., Cox, Jonathan A. G., Papadatos, George, van Westen, Gerard, Lelièvre, Joël, Calus, Szymon T., Loman, Nicholas J., Ballell, Lluis, Barros, David, Overington, John P., Besra, Gurdyal S.
Publicado 2015

Disinfection exhibits systematic impacts on the drinking water microbiome

por Dai, Zihan, Sevillano-Rivera, Maria C., Calus, Szymon T., Bautista-de los Santos, Q. Melina, Eren, A. Murat, van der Wielen, Paul W. J. J., Ijaz, Umer Z., Pinto, Ameet J.
Publicado 2020

Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella

por Quick, Joshua, Ashton, Philip, Calus, Szymon, Chatt, Carole, Gossain, Savita, Hawker, Jeremy, Nair, Satheesh, Neal, Keith, Nye, Kathy, Peters, Tansy, De Pinna, Elizabeth, Robinson, Esther, Struthers, Keith, Webber, Mark, Catto, Andrew, Dallman, Timothy J., Hawkey, Peter, Loman, Nicholas J.
Publicado 2015

Extensive Modulation of the Fecal Metagenome in Children With Crohn's Disease During Exclusive Enteral Nutrition

por Quince, Christopher, Ijaz, Umer Zeeshan, Loman, Nick, Eren, A Murat, Saulnier, Delphine, Russell, Julie, Haig, Sarah J, Calus, Szymon T, Quick, Joshua, Barclay, Andrew, Bertz, Martin, Blaut, Michael, Hansen, Richard, McGrogan, Paraic, Russell, Richard K, Edwards, Christine A, Gerasimidis, Konstantinos
Publicado 2015