Order Under Uncertainty: Robust Differential Expression Analysis Using Probabilistic Models for Pseudotime Inference

por Campbell, Kieran R., Yau, Christopher
Publicado 2016

switchde: inference of switch-like differential expression along single-cell trajectories

por Campbell, Kieran R, Yau, Christopher
Publicado 2017

Probabilistic modeling of bifurcations in single-cell gene expression data using a Bayesian mixture of factor analyzers

por Campbell, Kieran R, Yau, Christopher
Publicado 2017

Uncovering pseudotemporal trajectories with covariates from single cell and bulk expression data

por Campbell, Kieran R, Yau, Christopher
Publicado 2018

A descriptive marker gene approach to single-cell pseudotime inference

por Campbell, Kieran R, Yau, Christopher
Publicado 2019

Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R

por McCarthy, Davis J, Campbell, Kieran R, Lun, Aaron T L, Wills, Quin F
Publicado 2017

The Landscape of COVID-19 Research in the United States: a Cross-sectional Study of Randomized Trials Registered on ClinicalTrials.Gov

por Sacks, Chana A., North, Crystal M., Wolf, Molly, Dougan, Michael, Campbell, Kieran R, Moggridge, Jason, Fralick, Michael
Publicado 2021

Single-Cell Sequencing of iPSC-Dopamine Neurons Reconstructs Disease Progression and Identifies HDAC4 as a Regulator of Parkinson Cell Phenotypes

por Lang, Charmaine, Campbell, Kieran R., Ryan, Brent J., Carling, Phillippa, Attar, Moustafa, Vowles, Jane, Perestenko, Olga V., Bowden, Rory, Baig, Fahd, Kasten, Meike, Hu, Michele T., Cowley, Sally A., Webber, Caleb, Wade-Martins, Richard
Publicado 2019

clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers

por Campbell, Kieran R., Steif, Adi, Laks, Emma, Zahn, Hans, Lai, Daniel, McPherson, Andrew, Farahani, Hossein, Kabeer, Farhia, O’Flanagan, Ciara, Biele, Justina, Brimhall, Jazmine, Wang, Beixi, Walters, Pascale, Consortium, IMAXT, Bouchard-Côté, Alexandre, Aparicio, Samuel, Shah, Sohrab P.
Publicado 2019

Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses

por O’Flanagan, Ciara H., Campbell, Kieran R., Zhang, Allen W., Kabeer, Farhia, Lim, Jamie L. P., Biele, Justina, Eirew, Peter, Lai, Daniel, McPherson, Andrew, Kong, Esther, Bates, Cherie, Borkowski, Kelly, Wiens, Matt, Hewitson, Brittany, Hopkins, James, Pham, Jenifer, Ceglia, Nicholas, Moore, Richard, Mungall, Andrew J., McAlpine, Jessica N., Shah, Sohrab P., Aparicio, Samuel
Publicado 2019

Eleven grand challenges in single-cell data science

por Lähnemann, David, Köster, Johannes, Szczurek, Ewa, McCarthy, Davis J., Hicks, Stephanie C., Robinson, Mark D., Vallejos, Catalina A., Campbell, Kieran R., Beerenwinkel, Niko, Mahfouz, Ahmed, Pinello, Luca, Skums, Pavel, Stamatakis, Alexandros, Attolini, Camille Stephan-Otto, Aparicio, Samuel, Baaijens, Jasmijn, Balvert, Marleen, Barbanson, Buys de, Cappuccio, Antonio, Corleone, Giacomo, Dutilh, Bas E., Florescu, Maria, Guryev, Victor, Holmer, Rens, Jahn, Katharina, Lobo, Thamar Jessurun, Keizer, Emma M., Khatri, Indu, Kielbasa, Szymon M., Korbel, Jan O., Kozlov, Alexey M., Kuo, Tzu-Hao, Lelieveldt, Boudewijn P.F., Mandoiu, Ion I., Marioni, John C., Marschall, Tobias, Mölder, Felix, Niknejad, Amir, Rączkowska, Alicja, Reinders, Marcel, Ridder, Jeroen de, Saliba, Antoine-Emmanuel, Somarakis, Antonios, Stegle, Oliver, Theis, Fabian J., Yang, Huan, Zelikovsky, Alex, McHardy, Alice C., Raphael, Benjamin J., Shah, Sohrab P., Schönhuth, Alexander
Publicado 2020