Boosting tissue-specific prediction of active cis-regulatory regions through deep learning and Bayesian optimization techniques

por Cappelletti, Luca, Petrini, Alessandro, Gliozzo, Jessica, Casiraghi, Elena, Schubach, Max, Kircher, Martin, Valentini, Giorgio
Publicado 2022

parSMURF, a high-performance computing tool for the genome-wide detection of pathogenic variants

por Petrini, Alessandro, Mesiti, Marco, Schubach, Max, Frasca, Marco, Danis, Daniel, Re, Matteo, Grossi, Giuliano, Cappelletti, Luca, Castrignanò, Tiziana, Robinson, Peter N, Valentini, Giorgio
Publicado 2020

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

por Reese, Justin, Unni, Deepak, Callahan, Tiffany J., Cappelletti, Luca, Ravanmehr, Vida, Carbon, Seth, Fontana, Tommaso, Blau, Hannah, Matentzoglu, Nicolas, Harris, Nomi L., Munoz-Torres, Monica C., Robinson, Peter N., Joachimiak, Marcin P., Mungall, Christopher J.
Publicado 2020

Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer

por Ravanmehr, Vida, Blau, Hannah, Cappelletti, Luca, Fontana, Tommaso, Carmody, Leigh, Coleman, Ben, George, Joshy, Reese, Justin, Joachimiak, Marcin, Bocci, Giovanni, Hansen, Peter, Bult, Carol, Rueter, Jens, Casiraghi, Elena, Valentini, Giorgio, Mungall, Christopher, Oprea, Tudor I, Robinson, Peter N
Publicado 2021

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

por Reese, Justin T., Unni, Deepak, Callahan, Tiffany J., Cappelletti, Luca, Ravanmehr, Vida, Carbon, Seth, Shefchek, Kent A., Good, Benjamin M., Balhoff, James P., Fontana, Tommaso, Blau, Hannah, Matentzoglu, Nicolas, Harris, Nomi L., Munoz-Torres, Monica C., Haendel, Melissa A., Robinson, Peter N., Joachimiak, Marcin P., Mungall, Christopher J.
Publicado 2020

NSAID use and clinical outcomes in COVID-19 patients: A 38-center retrospective cohort study

por Reese, Justin T., Coleman, Ben, Chan, Lauren, Blau, Hannah, Callahan, Tiffany J., Cappelletti, Luca, Fontana, Tommaso, Bradwell, Katie Rebecca, Harris, Nomi L., Casiraghi, Elena, Valentini, Giorgio, Karlebach, Guy, Deer, Rachel, McMurry, Julie A., Haendel, Melissa A., Chute, Christopher G., Pfaff, Emily, Moffitt, Richard, Spratt, Heidi, Singh, Jasvinder, Mungall, Christopher J., Williams, Andrew E., Robinson, Peter N.
Publicado 2021

NSAID use and clinical outcomes in COVID-19 patients: a 38-center retrospective cohort study

por Reese, Justin T., Coleman, Ben, Chan, Lauren, Blau, Hannah, Callahan, Tiffany J., Cappelletti, Luca, Fontana, Tommaso, Bradwell, Katie R., Harris, Nomi L., Casiraghi, Elena, Valentini, Giorgio, Karlebach, Guy, Deer, Rachel, McMurry, Julie A., Haendel, Melissa A., Chute, Christopher G., Pfaff, Emily, Moffitt, Richard, Spratt, Heidi, Singh, Jasvinder A., Mungall, Christopher J., Williams, Andrew E., Robinson, Peter N.
Publicado 2022

KG-Hub—building and exchanging biological knowledge graphs

por Caufield, J Harry, Putman, Tim, Schaper, Kevin, Unni, Deepak R, Hegde, Harshad, Callahan, Tiffany J, Cappelletti, Luca, Moxon, Sierra A T, Ravanmehr, Vida, Carbon, Seth, Chan, Lauren E, Cortes, Katherina, Shefchek, Kent A, Elsarboukh, Glass, Balhoff, Jim, Fontana, Tommaso, Matentzoglu, Nicolas, Bruskiewich, Richard M, Thessen, Anne E, Harris, Nomi L, Munoz-Torres, Monica C, Haendel, Melissa A, Robinson, Peter N, Joachimiak, Marcin P, Mungall, Christopher J, Reese, Justin T
Publicado 2023

Generalisable long COVID subtypes: Findings from the NIH N3C and RECOVER programmes

por Reese, Justin T., Blau, Hannah, Casiraghi, Elena, Bergquist, Timothy, Loomba, Johanna J., Callahan, Tiffany J., Laraway, Bryan, Antonescu, Corneliu, Coleman, Ben, Gargano, Michael, Wilkins, Kenneth J., Cappelletti, Luca, Fontana, Tommaso, Ammar, Nariman, Antony, Blessy, Murali, T.M., Caufield, J. Harry, Karlebach, Guy, McMurry, Julie A., Williams, Andrew, Moffitt, Richard, Banerjee, Jineta, Solomonides, Anthony E., Davis, Hannah, Kostka, Kristin, Valentini, Giorgio, Sahner, David, Chute, Christopher G., Madlock-Brown, Charisse, Haendel, Melissa A., Robinson, Peter N.
Publicado 2022