Filling the gaps in the global prevalence map of clinical antimicrobial resistance

por Oldenkamp, Rik, Schultsz, Constance, Mancini, Emiliano, Cappuccio, Antonio
Publicado 2021

Advances in the computational landscape for repurposed drugs against COVID-19

por Aronskyy, Illya, Masoudi-Sobhanzadeh, Yosef, Cappuccio, Antonio, Zaslavsky, Elena
Publicado 2021

Deciphering the combinatorial landscape of immunity

por Cappuccio, Antonio, Jensen, Shane T, Hartmann, Boris M, Sealfon, Stuart C, Soumelis, Vassili, Zaslavsky, Elena
Publicado 2020

Plausibility of stromal initiation of epithelial cancers without a mutation in the epithelium: a computer simulation of morphostats

por Baker, Stuart G, Soto, Ana M, Sonnenschein, Carlos, Cappuccio, Antonio, Potter, John D, Kramer, Barnett S
Publicado 2009

Benchmarking transcriptional host response signatures for infection diagnosis

por Chawla, Daniel G., Cappuccio, Antonio, Tamminga, Andrea, Sealfon, Stuart C., Zaslavsky, Elena, Kleinstein, Steven H.
Publicado 2022

Combinatorial code governing cellular responses to complex stimuli

por Cappuccio, Antonio, Zollinger, Raphaël, Schenk, Mirjam, Walczak, Aleksandra, Servant, Nicolas, Barillot, Emmanuel, Hupé, Philippe, Modlin, Robert L., Soumelis, Vassili
Publicado 2015

Dissection of intercellular communication using the transcriptome-based framework ICELLNET

por Noël, Floriane, Massenet-Regad, Lucile, Carmi-Levy, Irit, Cappuccio, Antonio, Grandclaudon, Maximilien, Trichot, Coline, Kieffer, Yann, Mechta-Grigoriou, Fatima, Soumelis, Vassili
Publicado 2021

Earlier detection of SARS‐CoV‐2 infection by blood RNA signature microfluidics assay

por Cappuccio, Antonio, Geis, Jennifer, Ge, Yongchao, Nair, Venugopalan D., Ramalingam, Naveen, Mao, Weiguang, Chikina, Maria, Letizia, Andrew G., Sealfon, Stuart C.
Publicado 2022

Automated single-cell omics end-to-end framework with data-driven batch inference

por Wang, Yuan, Thistlethwaite, William, Tadych, Alicja, Ruf-Zamojski, Frederique, Bernard, Daniel J, Cappuccio, Antonio, Zaslavsky, Elena, Chen, Xi, Sealfon, Stuart C., Troyanskaya, Olga G.
Publicado 2023

Asymptomatic SARS-CoV-2 Infection Is Associated With Higher Levels of Serum IL-17C, Matrix Metalloproteinase 10 and Fibroblast Growth Factors Than Mild Symptomatic COVID-19

por Soares-Schanoski, Alessandra, Sauerwald, Natalie, Goforth, Carl W., Periasamy, Sivakumar, Weir, Dawn L., Lizewski, Stephen, Lizewski, Rhonda, Ge, Yongchao, Kuzmina, Natalia A., Nair, Venugopalan D., Vangeti, Sindhu, Marjanovic, Nada, Cappuccio, Antonio, Cheng, Wan Sze, Mofsowitz, Sagie, Miller, Clare M., Yu, Xuechen B., George, Mary-Catherine, Zaslavsky, Elena, Bukreyev, Alexander, Troyanskaya, Olga G., Sealfon, Stuart C., Letizia, Andrew G., Ramos, Irene
Publicado 2022

Blood RNA alternative splicing events as diagnostic biomarkers for infectious disease

por Zhang, Zijun, Sauerwald, Natalie, Cappuccio, Antonio, Ramos, Irene, Nair, Venugopalan D., Nudelman, German, Zaslavsky, Elena, Ge, Yongchao, Gaitas, Angelo, Ren, Hui, Brockman, Joel, Geis, Jennifer, Ramalingam, Naveen, King, David, McClain, Micah T., Woods, Christopher W., Henao, Ricardo, Burke, Thomas W., Tsalik, Ephraim L., Goforth, Carl W., Lizewski, Rhonda A., Lizewski, Stephen E., Weir, Dawn L., Letizia, Andrew G., Sealfon, Stuart C., Troyanskaya, Olga G.
Publicado 2023

A methylation clock model of mild SARS‐CoV‐2 infection provides insight into immune dysregulation

por Mao, Weiguang, Miller, Clare M, Nair, Venugopalan D, Ge, Yongchao, Amper, Mary Anne S, Cappuccio, Antonio, George, Mary‐Catherine, Goforth, Carl W, Guevara, Kristy, Marjanovic, Nada, Nudelman, German, Pincas, Hanna, Ramos, Irene, Sealfon, Rachel S G, Soares‐Schanoski, Alessandra, Vangeti, Sindhu, Vasoya, Mital, Weir, Dawn L, Zaslavsky, Elena, Kim‐Schulze, Seunghee, Gnjatic, Sacha, Merad, Miriam, Letizia, Andrew G, Troyanskaya, Olga G, Sealfon, Stuart C, Chikina, Maria
Publicado 2023

Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data

por Chen, Xi, Wang, Yuan, Cappuccio, Antonio, Cheng, Wan-Sze, Zamojski, Frederique Ruf, Nair, Venugopalan D., Miller, Clare M., Rubenstein, Aliza B., Nudelman, German, Tadych, Alicja, Theesfeld, Chandra L., Vornholt, Alexandria, George, Mary-Catherine, Ruffin, Felicia, Dagher, Michael, Chawla, Daniel G., Soares-Schanoski, Alessandra, Spurbeck, Rachel R., Ndhlovu, Lishomwa C., Sebra, Robert, Kleinstein, Steven H., Letizia, Andrew G., Ramos, Irene, Fowler, Vance G., Woods, Christopher W., Zaslavsky, Elena, Troyanskaya, Olga G., Sealfon, Stuart C.
Publicado 2023

Eleven grand challenges in single-cell data science

por Lähnemann, David, Köster, Johannes, Szczurek, Ewa, McCarthy, Davis J., Hicks, Stephanie C., Robinson, Mark D., Vallejos, Catalina A., Campbell, Kieran R., Beerenwinkel, Niko, Mahfouz, Ahmed, Pinello, Luca, Skums, Pavel, Stamatakis, Alexandros, Attolini, Camille Stephan-Otto, Aparicio, Samuel, Baaijens, Jasmijn, Balvert, Marleen, Barbanson, Buys de, Cappuccio, Antonio, Corleone, Giacomo, Dutilh, Bas E., Florescu, Maria, Guryev, Victor, Holmer, Rens, Jahn, Katharina, Lobo, Thamar Jessurun, Keizer, Emma M., Khatri, Indu, Kielbasa, Szymon M., Korbel, Jan O., Kozlov, Alexey M., Kuo, Tzu-Hao, Lelieveldt, Boudewijn P.F., Mandoiu, Ion I., Marioni, John C., Marschall, Tobias, Mölder, Felix, Niknejad, Amir, Rączkowska, Alicja, Reinders, Marcel, Ridder, Jeroen de, Saliba, Antoine-Emmanuel, Somarakis, Antonios, Stegle, Oliver, Theis, Fabian J., Yang, Huan, Zelikovsky, Alex, McHardy, Alice C., Raphael, Benjamin J., Shah, Sohrab P., Schönhuth, Alexander
Publicado 2020