D-MaPs - DNA-microarray projects: Web-based software for multi-platform microarray analysis

por Carazzolle, Marcelo F., Herig, Taís S., Deckmann, Ana C., Pereira, Gonçalo A. G.
Publicado 2009

RNAsamba: neural network-based assessment of the protein-coding potential of RNA sequences

por Camargo, Antonio P, Sourkov, Vsevolod, Pereira, Gonçalo A G, Carazzolle, Marcelo F
Publicado 2020

CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components

por Heberle, Henry, Carazzolle, Marcelo Falsarella, Telles, Guilherme P., Meirelles, Gabriela Vaz, Minghim, Rosane
Publicado 2017

A web-based bioinformatics interface applied to the GENOSOJA Project: Databases and pipelines

por do Nascimento, Leandro Costa, Costa, Gustavo Gilson Lacerda, Binneck, Eliseu, Pereira, Gonçalo Amarante Guimarães, Carazzolle, Marcelo Falsarella
Publicado 2012

Development of novel EST-SSR markers in the macaúba palm (Acrocomia aculeata) using transcriptome sequencing and cross-species transferability in Arecaceae species

por Bazzo, Bárbara Regina, de Carvalho, Lucas Miguel, Carazzolle, Marcelo Falsarella, Pereira, Gonçalo Amarante Guimarães, Colombo, Carlos Augusto
Publicado 2018

Fungal communities represent the majority of root-specific transcripts in the transcriptomes of Agave plants grown in semiarid regions

por Marone, Marina Püpke, Campanari, Maria Fernanda Zaneli, Raya, Fabio Trigo, Pereira, Gonçalo Amarante Guimarães, Carazzolle, Marcelo Falsarella
Publicado 2022

Identification of SNPs in RNA-seq data of two cultivars of Glycine max (soybean) differing in drought resistance

por Vidal, Ramon Oliveira, do Nascimento, Leandro Costa, Mondego, Jorge Maurício Costa, Pereira, Gonçalo Amarante Guimarães, Carazzolle, Marcelo Falsarella
Publicado 2012

Positive Selection Evidence in Xylose-Related Genes Suggests Methylglyoxal Reductase as a Target for the Improvement of Yeasts’ Fermentation in Industry

por Borelli, Guilherme, Fiamenghi, Mateus Bernabe, dos Santos, Leandro Vieira, Carazzolle, Marcelo Falsarella, Pereira, Gonçalo Amarante Guimarães, José, Juliana
Publicado 2019

Gene Co-expression Network Reveals Potential New Genes Related to Sugarcane Bagasse Degradation in Trichoderma reesei RUT-30

por Borin, Gustavo Pagotto, Carazzolle, Marcelo Falsarella, dos Santos, Renato Augusto Corrêa, Riaño-Pachón, Diego Mauricio, Oliveira, Juliana Velasco de Castro
Publicado 2018

IIS – Integrated Interactome System: A Web-Based Platform for the Annotation, Analysis and Visualization of Protein-Metabolite-Gene-Drug Interactions by Integrating a Variety of Da...

por Carazzolle, Marcelo Falsarella, de Carvalho, Lucas Miguel, Slepicka, Hugo Henrique, Vidal, Ramon Oliveira, Pereira, Gonçalo Amarante Guimarães, Kobarg, Jörg, Vaz Meirelles, Gabriela
Publicado 2014

Effects of nitrogen fertilization on global xylem transcript profiling of Eucalyptus urophylla x grandis evaluated by RNA-seq technology

por Camargo, Eduardo, Costa, Leandro, Soler, Marçal, Salazar, Marcela, Lepikson, Jorge, Gonçalves, Danieli, Marques, Wesley, Carazzolle, Marcelo, Martinez, Yves, Grima-Pettenati, Jacqueline, Pereira, Gonçalo
Publicado 2011

Large-scale analysis of differential gene expression in coffee genotypes resistant and susceptible to leaf miner–toward the identification of candidate genes for marker assisted-se...

por Cardoso, Danielle C, Martinati, Juliana C, Giachetto, Poliana F, Vidal, Ramon O, Carazzolle, Marcelo F, Padilha, Lilian, Guerreiro-Filho, Oliveiro, Maluf, Mirian P
Publicado 2014

EUCANEXT: an integrated database for the exploration of genomic and transcriptomic data from Eucalyptus species

por Nascimento, Leandro Costa, Salazar, Marcela Mendes, Lepikson-Neto, Jorge, Camargo, Eduardo Leal Oliveira, Parreiras, Lucas Salera, Pereira, Gonçalo Amarante Guimarães, Carazzolle, Marcelo Falsarella
Publicado 2017

QTL mapping of a Brazilian bioethanol strain links the cell wall protein-encoding gene GAS1 to low pH tolerance in S. cerevisiae

por Coradini, Alessandro L. V., da Silveira Bezerra de Mello, Fellipe, Furlan, Monique, Maneira, Carla, Carazzolle, Marcelo F., Pereira, Gonçalo Amarante Guimaraes, Teixeira, Gleidson Silva
Publicado 2021

Identification of putative TAL effector targets of the citrus canker pathogens shows functional convergence underlying disease development and defense response

por Pereira, Andre LA, Carazzolle, Marcelo F, Abe, Valeria Y, de Oliveira, Maria LP, Domingues, Mariane N, Silva, Jaqueline C, Cernadas, Raul A, Benedetti, Celso E
Publicado 2014

Machine learning and comparative genomics approaches for the discovery of xylose transporters in yeast

por Fiamenghi, Mateus Bernabe, Bueno, João Gabriel Ribeiro, Camargo, Antônio Pedro, Borelli, Guilherme, Carazzolle, Marcelo Falsarella, Pereira, Gonçalo Amarante Guimarães, dos Santos, Leandro Vieira, José, Juliana
Publicado 2022

Phenotypic and Genotypic Features of a Salmonella Heidelberg Strain Isolated in Broilers in Brazil and Their Possible Association to Antibiotics and Short-Chain Organic Acids Resis...

por Santin, Elizabeth, Hayashi, Ricardo Mitsuo, Wammes, Jessica Caroline, Gonzalez-Esquerra, Ricardo, Carazzolle, Marcelo Falsarella, Freire, Caio César de Melo, Monzani, Paulo Sérgio, da Cunha, Anderson Ferreira
Publicado 2017

Saccharomyces cerevisiae transcriptional reprograming due to bacterial contamination during industrial scale bioethanol production

por Carvalho-Netto, Osmar V, Carazzolle, Marcelo F, Mofatto, Luciana S, Teixeira, Paulo JPL, Noronha, Melline F, Calderón, Luige AL, Mieczkowski, Piotr A, Argueso, Juan Lucas, Pereira, Gonçalo AG
Publicado 2015

Functional genomics analysis of a phyllospheric Pseudomonas spp with potential for biological control against coffee rust

por de Sousa, Leandro Pio, Cipriano, Matheus Aparecido Pereira, da Silva, Marcio José, Patrício, Flávia Rodrigues Alves, Freitas, Sueli dos Santos, Carazzolle, Marcelo Falsarella, Mondego, Jorge Maurício Costa
Publicado 2022

Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot

por Camargo, Antonio P., de Souza, Rafael S. C., Jose, Juliana, Gerhardt, Isabel R., Dante, Ricardo A., Mukherjee, Supratim, Huntemann, Marcel, Kyrpides, Nikos C., Carazzolle, Marcelo F., Arruda, Paulo
Publicado 2022