Coronavirus discovery by metagenomic sequencing: a tool for pandemic preparedness

por Carbo, Ellen C., Sidorov, Igor A., Zevenhoven-Dobbe, Jessika C., Snijder, Eric J., Claas, Eric C., Laros, Jeroen F.J., Kroes, Aloys C.M., de Vries, Jutte J.C.
Publicado 2020

Longitudinal Monitoring of DNA Viral Loads in Transplant Patients Using Quantitative Metagenomic Next-Generation Sequencing

por Carbo, Ellen C., Russcher, Anne, Kraakman, Margriet E. M., de Brouwer, Caroline S., Sidorov, Igor A., Feltkamp, Mariet C. W., Kroes, Aloys C. M., Claas, Eric C. J., de Vries, Jutte J. C.
Publicado 2022

Performance of Five Metagenomic Classifiers for Virus Pathogen Detection Using Respiratory Samples from a Clinical Cohort

por Carbo, Ellen C., Sidorov, Igor A., van Rijn-Klink, Anneloes L., Pappas, Nikos, van Boheemen, Sander, Mei, Hailiang, Hiemstra, Pieter S., Eagan, Tomas M., Claas, Eric C. J., Kroes, Aloys C. M., de Vries, Jutte J. C.
Publicado 2022

Retrospective Validation of a Metagenomic Sequencing Protocol for Combined Detection of RNA and DNA Viruses Using Respiratory Samples from Pediatric Patients

por van Boheemen, Sander, van Rijn, Anneloes L., Pappas, Nikos, Carbo, Ellen C., Vorderman, Ruben H.P., Sidorov, Igor, van `t Hof, Peter J., Mei, Hailiang, Claas, Eric C.J., Kroes, Aloys C.M., de Vries, Jutte J.C.
Publicado 2020

The respiratory virome and exacerbations in patients with chronic obstructive pulmonary disease

por van Rijn, Anneloes L., van Boheemen, Sander, Sidorov, Igor, Carbo, Ellen C., Pappas, Nikos, Mei, Hailiang, Feltkamp, Mariet, Aanerud, Marianne, Bakke, Per, Claas, Eric C. J., Eagan, Tomas M., Hiemstra, Pieter S., Kroes, Aloys C. M., de Vries, Jutte J. C.
Publicado 2019

A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-2

por Carbo, Ellen C., Mourik, Kees, Boers, Stefan A., Munnink, Bas Oude, Nieuwenhuijse, David, Jonges, Marcel, Welkers, Matthijs R. A., Matamoros, Sebastien, van Harinxma thoe Slooten, Joost, Kraakman, Margriet E. M., Karelioti, Evita, van der Meer, David, Veldkamp, Karin Ellen, Kroes, Aloys C. M., Sidorov, Igor, de Vries, Jutte J. C.
Publicado 2023

STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies

por Bharucha, Tehmina, Oeser, Clarissa, Balloux, Francois, Brown, Julianne R, Carbo, Ellen C, Charlett, Andre, Chiu, Charles Y, Claas, Eric C J, de Goffau, Marcus C, de Vries, Jutte J C, Eloit, Marc, Hopkins, Susan, Huggett, Jim F, MacCannell, Duncan, Morfopoulou, Sofia, Nath, Avindra, O'Sullivan, Denise M, Reoma, Lauren B, Shaw, Liam P, Sidorov, Igor, Simner, Patricia J, Van Tan, Le, Thomson, Emma C, van Dorp, Lucy, Wilson, Michael R, Breuer, Judith, Field, Nigel
Publicado 2020