Class Ib MHC–Mediated Immune Interactions Play a Critical Role in Maintaining Mucosal Homeostasis in the Mammalian Large Intestine

por Dasgupta, Suryasarathi, Maricic, Igor, Tang, Jay, Wandro, Stephen, Weldon, Kelly, Carpenter, Carolina S., Eckmann, Lars, Rivera-Nieves, Jesus, Sandborn, William, Knight, Rob, Dorrestein, Peter, Swafford, Austin D., Kumar, Vipin
Publicado 2021

Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs

por Gauglitz, Julia M., Morton, James T., Tripathi, Anupriya, Hansen, Shalisa, Gaffney, Michele, Carpenter, Carolina, Weldon, Kelly C., Shah, Riya, Parampil, Amy, Fidgett, Andrea L., Swafford, Austin D., Knight, Rob, Dorrestein, Pieter C.
Publicado 2020

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

por Minich, Jeremiah, Ali, Farhana, Marotz, Clarisse, Belda-Ferre, Pedro, Chiang, Leslie, Shaffer, Justin P., Carpenter, Carolina S., McDonald, Daniel, Gilbert, Jack, Allard, Sarah M., Allen, Eric E, Knight, Rob, Sweeney, Daniel A., Swafford, Austin D.
Publicado 2020

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

por Minich, Jeremiah J., Ali, Farhana, Marotz, Clarisse, Belda-Ferre, Pedro, Chiang, Leslie, Shaffer, Justin P., Carpenter, Carolina S., McDonald, Daniel, Gilbert, Jack, Allard, Sarah M., Allen, Eric E., Knight, Rob, Sweeney, Daniel A., Swafford, Austin D.
Publicado 2021

Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome

por Taylor, Bryn C., Sheikh Andalibi, Mohammadsobhan, Wandro, Stephen, Weldon, Kelly C., Sepich-Poore, Gregory D., Carpenter, Carolina S., Fraraccio, Serena, Franklin, Donald, Iudicello, Jennifer E., Letendre, Scott, Gianella, Sara, Grant, Igor, Ellis, Ronald J., Heaton, Robert K., Knight, Rob, Swafford, Austin D.
Publicado 2023

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities

por Shaffer, Justin P., Marotz, Clarisse, Belda-Ferre, Pedro, Martino, Cameron, Wandro, Stephen, Estaki, Mehrbod, Salido, Rodolfo A., Carpenter, Carolina S., Zaramela, Livia S., Minich, Jeremiah J., Bryant, MacKenzie, Sanders, Karenina, Fraraccio, Serena, Ackermann, Gail, Humphrey, Gregory, Swafford, Austin D., Miller-Montgomery, Sandrine, Knight, Rob
Publicado 2020

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities

por Shaffer, Justin P, Marotz, Clarisse, Belda-Ferre, Pedro, Martino, Cameron, Wandro, Stephen, Estaki, Mehrbod, Salido, Rodolfo A, Carpenter, Carolina S, Zaramela, Livia S, Minich, Jeremiah J, Bryant, MacKenzie, Sanders, Karenina, Fraraccio, Serena, Ackermann, Gail, Humphrey, Gregory, Swafford, Austin D, Miller-Montgomery, Sandrine, Knight, Rob
Publicado 2021

Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases

por Armstrong, George, Martino, Cameron, Morris, Justin, Khaleghi, Behnam, Kang, Jaeyoung, DeReus, Jeff, Zhu, Qiyun, Roush, Daniel, McDonald, Daniel, Gonazlez, Antonio, Shaffer, Justin P., Carpenter, Carolina, Estaki, Mehrbod, Wandro, Stephen, Eilert, Sean, Akel, Ameen, Eno, Justin, Curewitz, Ken, Swafford, Austin D., Moshiri, Niema, Rosing, Tajana, Knight, Rob
Publicado 2022

Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity

por Fang, Xin, Vázquez-Baeza, Yoshiki, Elijah, Emmanuel, Vargas, Fernando, Ackermann, Gail, Humphrey, Gregory, Lau, Rebecca, Weldon, Kelly C, Sanders, Jon G, Panitchpakdi, Morgan, Carpenter, Carolina, Jarmusch, Alan K, Neill, Jennifer, Miralles, Ara, Dulai, Parambir, Singh, Siddharth, Tsai, Matthew, Swafford, Austin D, Smarr, Larry, Boyle, David L, Palsson, Bernhard O, Chang, John T, Dorrestein, Pieter C, Sandborn, William J, Knight, Rob, Boland, Brigid S
Publicado 2020