Draft Genome Sequence of Escherichia coli DSM 12242, a Highly Efficient Host Strain for the Isolation of Somatic Coliphages

por Pacífico, Cátia, Sofka, Dmitrij, Carriço, João André, Hilbert, Friederike
Publicado 2019

Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement

por Pinto, Francisco R, Carriço, João A, Ramirez, Mário, Almeida, Jonas S
Publicado 2007

Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach

por Francisco, Alexandre P, Bugalho, Miguel, Ramirez, Mário, Carriço, João A
Publicado 2009

Origin, evolution, and distribution of the molecular machinery for biosynthesis of sialylated lipooligosaccharide structures in Campylobacter coli

por Culebro, Alejandra, Machado, Miguel P., Carriço, João André, Rossi, Mirko
Publicado 2018

Food Safety in the Age of Next Generation Sequencing, Bioinformatics, and Open Data Access

por Taboada, Eduardo N., Graham, Morag R., Carriço, João A., Van Domselaar, Gary
Publicado 2017

Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas

por Mamede, Rafael, Vila-Cerqueira, Pedro, Silva, Mickael, Carriço, João A, Ramirez, Mário
Publicado 2020

Evaluation of Jackknife and Bootstrap for Defining Confidence Intervals for Pairwise Agreement Measures

por Severiano, Ana, Carriço, João A., Robinson, D. Ashley, Ramirez, Mário, Pinto, Francisco R.
Publicado 2011

Not Seeing the Forest for the Trees: Size of the Minimum Spanning Trees (MSTs) Forest and Branch Significance in MST-Based Phylogenetic Analysis

por Teixeira, Andreia Sofia, Monteiro, Pedro T., Carriço, João A, Ramirez, Mário, Francisco, Alexandre P.
Publicado 2015

PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees

por Ribeiro-Gonçalves, Bruno, Francisco, Alexandre P., Vaz, Cátia, Ramirez, Mário, Carriço, João André
Publicado 2016

Emergence of the Same Successful Clade among Distinct Populations of emm89 Streptococcus pyogenes in Multiple Geographic Regions

por Friães, Ana, Machado, Miguel P., Pato, Catarina, Carriço, João, Melo-Cristino, José, Ramirez, Mario
Publicado 2015

Clonal and serotype dynamics of serogroup 6 isolates causing invasive pneumococcal disease in Portugal: 1999-2012

por Diamantino-Miranda, Jorge, Aguiar, Sandra Isabel, Carriço, João André, Melo-Cristino, José, Ramirez, Mário
Publicado 2017

Spontaneous Genomic Variation as a Survival Strategy of Nosocomial Staphylococcus haemolyticus

por Bouchami, Ons, Machado, Miguel, Carriço, João André, Melo-Cristino, José, de Lencastre, Hermínia, Miragaia, Maria
Publicado 2023

Fast phylogenetic inference from typing data

por Carriço, João A., Crochemore, Maxime, Francisco, Alexandre P., Pissis, Solon P., Ribeiro-Gonçalves, Bruno, Vaz, Cátia
Publicado 2018

Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data

por Jesus, Tiago F, Ribeiro-Gonçalves, Bruno, Silva, Diogo N, Bortolaia, Valeria, Ramirez, Mário, Carriço, João A
Publicado 2019

LMAS: evaluating metagenomic short de novo assembly methods through defined communities

por Mendes, Catarina Inês, Vila-Cerqueira, Pedro, Motro, Yair, Moran-Gilad, Jacob, Carriço, João André, Ramirez, Mário
Publicado 2022

Increasing macrolide resistance among Streptococcus agalactiae causing invasive disease in non-pregnant adults was driven by a single capsular-transformed lineage, Portugal, 2009 t...

por Lopes, Elísia, Fernandes, Tânia, Machado, Miguel P, Carriço, João André, Melo-Cristino, José, Ramirez, Mário, Martins, Elisabete R
Publicado 2018

Natural Occurrence of Escherichia coli-Infecting Bacteriophages in Clinical Samples

por Pacífico, Cátia, Hilbert, Miriam, Sofka, Dmitrij, Dinhopl, Nora, Pap, Ildiko-Julia, Aspöck, Christoph, Carriço, João André, Hilbert, Friederike
Publicado 2019

The Use of Machine Learning Methodologies to Analyse Antibiotic and Biocide Susceptibility in Staphylococcus aureus

por Coelho, Joana Rosado, Carriço, João André, Knight, Daniel, Martínez, Jose-Luis, Morrissey, Ian, Oggioni, Marco Rinaldo, Freitas, Ana Teresa
Publicado 2013

A widespread family of polymorphic toxins encoded by temperate phages

por Jamet, Anne, Touchon, Marie, Ribeiro-Gonçalves, Bruno, Carriço, João André, Charbit, Alain, Nassif, Xavier, Ramirez, Mario, Rocha, Eduardo P. C.
Publicado 2017

chewBBACA: A complete suite for gene-by-gene schema creation and strain identification

por Silva, Mickael, Machado, Miguel P., Silva, Diogo N., Rossi, Mirko, Moran-Gilad, Jacob, Santos, Sergio, Ramirez, Mario, Carriço, João André
Publicado 2018