Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement

por Pinto, Francisco R, Carriço, João A, Ramirez, Mário, Almeida, Jonas S
Publicado 2007

Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach

por Francisco, Alexandre P, Bugalho, Miguel, Ramirez, Mário, Carriço, João A
Publicado 2009

Food Safety in the Age of Next Generation Sequencing, Bioinformatics, and Open Data Access

por Taboada, Eduardo N., Graham, Morag R., Carriço, João A., Van Domselaar, Gary
Publicado 2017

Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas

por Mamede, Rafael, Vila-Cerqueira, Pedro, Silva, Mickael, Carriço, João A, Ramirez, Mário
Publicado 2020

Evaluation of Jackknife and Bootstrap for Defining Confidence Intervals for Pairwise Agreement Measures

por Severiano, Ana, Carriço, João A., Robinson, D. Ashley, Ramirez, Mário, Pinto, Francisco R.
Publicado 2011

Not Seeing the Forest for the Trees: Size of the Minimum Spanning Trees (MSTs) Forest and Branch Significance in MST-Based Phylogenetic Analysis

por Teixeira, Andreia Sofia, Monteiro, Pedro T., Carriço, João A, Ramirez, Mário, Francisco, Alexandre P.
Publicado 2015

Fast phylogenetic inference from typing data

por Carriço, João A., Crochemore, Maxime, Francisco, Alexandre P., Pissis, Solon P., Ribeiro-Gonçalves, Bruno, Vaz, Cátia
Publicado 2018

Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data

por Jesus, Tiago F, Ribeiro-Gonçalves, Bruno, Silva, Diogo N, Bortolaia, Valeria, Ramirez, Mário, Carriço, João A
Publicado 2019

Distinct Phenotypic and Genomic Signatures Underlie Contrasting Pathogenic Potential of Staphylococcus epidermidis Clonal Lineages

por Espadinha, Diana, Sobral, Rita G., Mendes, Catarina Inês, Méric, Guillaume, Sheppard, Samuel K., Carriço, João A., de Lencastre, Hermínia, Miragaia, Maria
Publicado 2019

TypOn: the microbial typing ontology

por Vaz, Cátia, Francisco, Alexandre P, Silva, Mickael, Jolley, Keith A, Bray, James E, Pouseele, Hannes, Rothganger, Joerg, Ramirez, Mário, Carriço, João A
Publicado 2014

DEN-IM: dengue virus genotyping from amplicon and shotgun metagenomic sequencing

por Mendes, Catarina I., Lizarazo, Erley, Machado, Miguel P., Silva, Diogo N., Tami, Adriana, Ramirez, Mário, Couto, Natacha, Rossen, John W. A., Carriço, João A.
Publicado 2020

Beta-hemolytic Streptococcus dysgalactiae strains isolated from horses are a genetically distinct population within the Streptococcus dysgalactiae taxon

por Pinho, Marcos D., Erol, Erdal, Ribeiro-Gonçalves, Bruno, Mendes, Catarina I., Carriço, João A., Matos, Sandra C., Preziuso, Silvia, Luebke-Becker, Antina, Wieler, Lothar H., Melo-Cristino, Jose, Ramirez, Mario
Publicado 2016

BacPipe: A Rapid, User-Friendly Whole-Genome Sequencing Pipeline for Clinical Diagnostic Bacteriology

por Xavier, Basil B., Mysara, Mohamed, Bolzan, Mattia, Ribeiro-Gonçalves, Bruno, Alako, Blaise T.F., Harrison, Peter, Lammens, Christine, Kumar-Singh, Samir, Goossens, Herman, Carriço, João A., Cochrane, Guy, Malhotra-Kumar, Surbhi
Publicado 2019

Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

por Couto, Natacha, Schuele, Leonard, Raangs, Erwin C., Machado, Miguel P., Mendes, Catarina I., Jesus, Tiago F., Chlebowicz, Monika, Rosema, Sigrid, Ramirez, Mário, Carriço, João A., Autenrieth, Ingo B., Friedrich, Alex W., Peter, Silke, Rossen, John W.
Publicado 2018

Author Correction: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

por Couto, Natacha, Schuele, Leonard, Raangs, Erwin C., Machado, Miguel P., Mendes, Catarina I., Jesus, Tiago F., Chlebowicz, Monika, Rosema, Sigrid, Ramirez, Mário, Carriço, João A., Autenrieth, Ingo B., Friedrich, Alex W., Peter, Silke, Rossen, John W.
Publicado 2019

Two multi-fragment recombination events resulted in the β-lactam-resistant serotype 11A-ST6521 related to Spain(9V)-ST156 pneumococcal clone spreading in south-western Europe, 2008...

por González-Díaz, Aida, Machado, Miguel P, Càmara, Jordi, Yuste, José, Varon, Emmanuelle, Domenech, Miriam, Del Grosso, María, Marimón, José María, Cercenado, Emilia, Larrosa, Nieves, Quesada, María Dolores, Fontanals, Dionisia, El-Mniai, Assiya, Cubero, Meritxell, Carriço, João A, Martí, Sara, Ramirez, Mario, Ardanuy, Carmen
Publicado 2020