An efficient pseudomedian filter for tiling microrrays

por Royce, Thomas E, Carriero, Nicholas J, Gerstein, Mark B
Publicado 2007

Mocap: large-scale inference of transcription factor binding sites from chromatin accessibility

por Chen, Xi, Yu, Bowen, Carriero, Nicholas, Silva, Claudio, Bonneau, Richard
Publicado 2017

Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability

por Harrison, Paul M., Zheng, Deyou, Zhang, Zhaolei, Carriero, Nicholas, Gerstein, Mark
Publicado 2005

Whole-genome association studies on alcoholism comparing different phenotypes using single-nucleotide polymorphisms and microsatellites

por Chen, Liang, Liu, Nianjun, Wang, Shuang, Oh, Cheongeun, Carriero, Nicholas J, Zhao, Hongyu
Publicado 2005

Hinge Atlas: relating protein sequence to sites of structural flexibility

por Flores, Samuel C, Lu, Long J, Yang, Julie, Carriero, Nicholas, Gerstein, Mark B
Publicado 2007

Segmental duplications in the human genome reveal details of pseudogene formation

por Khurana, Ekta, Lam, Hugo Y. K., Cheng, Chao, Carriero, Nicholas, Cayting, Philip, Gerstein, Mark B.
Publicado 2010

Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional...

por Liu, Yuen-Jong, Zheng, Deyou, Balasubramanian, Suganthi, Carriero, Nicholas, Khurana, Ekta, Robilotto, Rebecca, Gerstein, Mark B
Publicado 2009

Characterizing chromatin landscape from aggregate and single-cell genomic assays using flexible duration modeling

por Gabitto, Mariano I., Rasmussen, Anders, Wapinski, Orly, Allaway, Kathryn, Carriero, Nicholas, Fishell, Gordon J., Bonneau, Richard
Publicado 2020

Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation

por Karro, John E., Yan, Yangpan, Zheng, Deyou, Zhang, Zhaolei, Carriero, Nicholas, Cayting, Philip, Harrrison, Paul, Gerstein, Mark
Publicado 2007

Pseudofam: the pseudogene families database

por Lam, Hugo Y. K., Khurana, Ekta, Fang, Gang, Cayting, Philip, Carriero, Nicholas, Cheung, Kei-Hoi, Gerstein, Mark B.
Publicado 2009

Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes

por Balasubramanian, Suganthi, Zheng, Deyou, Liu, Yuen-Jong, Fang, Gang, Frankish, Adam, Carriero, Nicholas, Robilotto, Rebecca, Cayting, Philip, Gerstein, Mark
Publicado 2009

PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data

por Korbel, Jan O, Abyzov, Alexej, Mu, Xinmeng Jasmine, Carriero, Nicholas, Cayting, Philip, Zhang, Zhengdong, Snyder, Michael, Gerstein, Mark B
Publicado 2009

YPED: An Integrated Bioinformatics Suite and Database for Mass Spectrometry-based Proteomics Research

por Colangelo, Christopher M., Shifman, Mark, Cheung, Kei-Hoi, Stone, Kathryn L., Carriero, Nicholas J., Gulcicek, Erol E., Lam, TuKiet T., Wu, Terence, Bjornson, Robert D., Bruce, Can, Nairn, Angus C., Rinehart, Jesse, Miller, Perry L., Williams, Kenneth R.
Publicado 2015

Modeling molecular development of breast cancer in canine mammary tumors

por Graim, Kiley, Gorenshteyn, Dmitriy, Robinson, David G., Carriero, Nicholas J., Cahill, James A., Chakrabarti, Rumela, Goldschmidt, Michael H., Durham, Amy C., Funk, Julien, Storey, John D., Kristensen, Vessela N., Theesfeld, Chandra L., Sorenmo, Karin U., Troyanskaya, Olga G.
Publicado 2021

High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0

por Skok Gibbs, Claudia, Jackson, Christopher A, Saldi, Giuseppe-Antonio, Tjärnberg, Andreas, Shah, Aashna, Watters, Aaron, De Veaux, Nicholas, Tchourine, Konstantine, Yi, Ren, Hamamsy, Tymor, Castro, Dayanne M, Carriero, Nicholas, Gorissen, Bram L, Gresham, David, Miraldi, Emily R, Bonneau, Richard
Publicado 2022

Keck Foundation Biotechnology Resource Laboratory, Yale University

por Stone, Kathryn L., Bjornson, Robert D., Blasko, Gregory G., Bruce, Can, Cofrancesco, Renee, Carriero, Nicholas J., Colangelo, Christopher M., Crawford, Janet K., Crawford, J. Myron, daSilva, Nancy C., Deluca, Joseph D., Elliott, James I., Elliott, Margaret M., Flory, P. John, Folta-Stogniew, Ewa J., Gulcicek, Erol, Kong, Yong, Lam, TuKiet T., Lee, Ji Y., Lin, Aiping, LoPresti, Mary B., Mane, Shrikant M., McMurray, Walter J., Tikhonova, Irina R., Westman, Sheila, Williams, Nancy A., Wu, Terence L., Hongyu, Zhao, Williams, Kenneth R.
Publicado 2008

De novo mutations in histone modifying genes in congenital heart disease

por Zaidi, Samir, Choi, Murim, Wakimoto, Hiroko, Ma, Lijiang, Jiang, Jianming, Overton, John D., Romano-Adesman, Angela, Bjornson, Robert D., Breitbart, Roger E., Brown, Kerry K., Carriero, Nicholas J., Cheung, Yee Him, Deanfield, John, DePalma, Steve, Fakhro, Khalid A., Glessner, Joseph, Hakonarson, Hakon, Italia, Michael, Kaltman, Jonathan R., Kaski, Juan, Kim, Richard, Kline, Jennie K., Lee, Teresa, Leipzig, Jeremy, Lopez, Alexander, Mane, Shrikant M., Mitchell, Laura E., Newburger, Jane W., Parfenov, Michael, Pe'er, Itsik, Porter, George, Roberts, Amy, Sachidanandam, Ravi, Sanders, Stephan J., Seiden, Howard S., State, Mathew W., Subramanian, Sailakshmi, Tikhonova, Irina R., Wang, Wei, Warburton, Dorothy, White, Peter S., Williams, Ismee A., Zhao, Hongyu, Seidman, Jonathan G., Brueckner, Martina, Chung, Wendy K., Gelb, Bruce D., Goldmuntz, Elizabeth, Seidman, Christine E., Lifton, Richard P.
Publicado 2013